View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_low_19 (Length: 308)
Name: NF16527_low_19
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 5726739 - 5727009
Alignment:
| Q |
18 |
gatttctcaactcttcatcattgaattaggaattcaatactcttcccagccaaatcacctacgggtagcaagtttatcaactttacccccaccaaaatca |
117 |
Q |
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| T |
5726739 |
gatttctcaactcttcatcattgaattaggaattcaatactcttccctgccaaatcacctacgggtagcaagtttatcagctttacccccaccaaaatca |
5726838 |
T |
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| Q |
118 |
caagctgaatgggctgccatatcctacttagtgaccattaattaactaacaggagccttaattttttgaaaaaacataacttgtcatttatataattgga |
217 |
Q |
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| T |
5726839 |
caagctgaatgggctgccatatcctgcttagtgaccattaattaactaacaggagccttaattttttgaaaaaacataacttgtcatttatataattgga |
5726938 |
T |
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| Q |
218 |
tcacaaggagaattc-aagatgaaatgtgcagttccttaaattgtagttatagggtggacggggcgacgac |
287 |
Q |
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| T |
5726939 |
tcacaaggagaattcaaagatgaaatgtgcagttccttaaattgtagttatagggtggacggggcgacgac |
5727009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 46119694 - 46119957
Alignment:
| Q |
18 |
gatttctcaactcttcatcattgaattaggaattcaatactcttcccagccaaatcacctacgggta----------gcaagtttatcaactttaccccc |
107 |
Q |
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| T |
46119694 |
gatttctcaactcttcatcattgaattgggaattcaatactcttccctgccaaatcacctgccggtatttagctagagcaagtttctcagctttaccccc |
46119793 |
T |
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| Q |
108 |
accaaaatcacaagctgaatgggctgccatatcctac-----ttagtgaccattaattaactaacaggagccttaattttttgaaaaaacataacttgtc |
202 |
Q |
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| T |
46119794 |
accaaaatcacaagctgaatgggctgccatatcctgcacatgtcagtgaccattaattaactagcaggagccttaaatttctgacaaaacataaattttc |
46119893 |
T |
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| Q |
203 |
atttatataattggatcacaaggagaattcaagatgaaatgtgcagttccttaaattgtagtta |
266 |
Q |
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| T |
46119894 |
atttatataattggatcagaaggagaattcaagatgaaatgtgcagttccttaaattgcagtta |
46119957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 34949064 - 34949207
Alignment:
| Q |
18 |
gatttctcaactcttcatcattgaattaggaattcaatactcttcccagccaaatcacctacgggtagcaagtttatcaactttacccccaccaaaatca |
117 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||| |||||||||||||||||||| |
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| T |
34949064 |
gatttcttaactcttgatcattgaattgggaattcaatactcttccctgccaaatcacctgccggtagcaaatttatcagctttacccccaccaaaatca |
34949163 |
T |
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| Q |
118 |
caagctgaatgggctgccatatcctacttagtgaccattaatta |
161 |
Q |
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| T |
34949164 |
caagctgaatgggctgccatatcctgctcagtgaccattaatta |
34949207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 13779877 - 13779913
Alignment:
| Q |
106 |
ccaccaaaatcacaagctgaatgggctgccatatcct |
142 |
Q |
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| T |
13779877 |
ccaccaaaatcacaggctgaatgggctgccatatcct |
13779913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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