View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_low_20 (Length: 302)
Name: NF16527_low_20
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 36364254 - 36364500
Alignment:
| Q |
1 |
actaccaccacctcattcatatccaatcactgattactctgactttaatgttcaaattgcatattgcaggggtggaacgaattctttaacatttcttcat |
100 |
Q |
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| T |
36364254 |
actaccaccacctcattcatatccaatcactgattactctgactttaatgttcaaattgcatattgcaggggtggaacgaattctttaacatttcttcat |
36364353 |
T |
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| Q |
101 |
tatttaattaaatgtcgaggttattaacagtatgctaattaaatacataattaatgactaatcaaatactgtttcttttgaaataacagaaattgcattt |
200 |
Q |
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| T |
36364354 |
tatttaattaaatgtcgaggttattaacagtatgctaattaaatacataattaatgactaatcaaataccgtttcttttgaaataacagaaattgcattt |
36364453 |
T |
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| Q |
201 |
atagtgttctctacttcgtgagcctaacaattcattttgagtatgtt |
247 |
Q |
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| T |
36364454 |
atagtgttctctacttcgtgagcctaacaattcattttgagtatgtt |
36364500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 36364522 - 36364551
Alignment:
| Q |
253 |
atgaatcttatgattcttactctctgagtc |
282 |
Q |
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| T |
36364522 |
atgaatcttatgattcttactctctgagtc |
36364551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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