View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_low_21 (Length: 295)
Name: NF16527_low_21
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 3752775 - 3752855
Alignment:
| Q |
204 |
tgtcttcatcatcttctgttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcac |
284 |
Q |
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| T |
3752775 |
tgtcttcatcatcttctcttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcac |
3752855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 3752582 - 3752707
Alignment:
| Q |
15 |
taagtagcccttatcatttcacctnnnnnnnn-ttcttgtgaaaatcttttttaagaacctttattttaaag----gtttatatgctcaacaatgtcacc |
109 |
Q |
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| T |
3752582 |
taagtagcccttatcatttcacctaaaaaaatattcttgtgaatatcttttttaagaacctttattttaaagtaaggtttatatgctcaacaatgtcacc |
3752681 |
T |
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| Q |
110 |
ttagctcttatataaacaaggaaagg |
135 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3752682 |
ttagctcttatataaacaaggaaagg |
3752707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 4047452 - 4047383
Alignment:
| Q |
215 |
tcttctgttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcac |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
4047452 |
tcttctgttcctttcctatttcctcaaactcattcaactgtccttccaaacccttcaaatttcttctcac |
4047383 |
T |
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