View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_low_22 (Length: 291)
Name: NF16527_low_22
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 47 - 288
Target Start/End: Original strand, 42823393 - 42823619
Alignment:
| Q |
47 |
taggtttggcttgtattgaaaggtaagcaagaaatccatccaatgttattgattgttataggcagtggagaaaacagactagtcttatagtcttaggagt |
146 |
Q |
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| T |
42823393 |
taggtttggcttgtattgaaaggtaagcaagaaatccatccaatgtt----------ataggcagtggagaaaacagactagtcttatagtcttagaagt |
42823482 |
T |
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| Q |
147 |
tgtcaaatgaaggtgaaacttgttcaagttgttgatcacttgtgtgtttgtaaagcaaaatcttaaacagtcatctttttgggaataacaaacaagctag |
246 |
Q |
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| T |
42823483 |
tgtcaaatgaaggtgaaacttgttcaagttgttgatcacttgtgtgtttgtaaagcaaaatattaaacagtcatctttttgggaataacaaacaagctag |
42823582 |
T |
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| Q |
247 |
tgtgattcacttgacttgtgttatagccttttcatctcactc |
288 |
Q |
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| T |
42823583 |
tgtgattc-----acttgtgttatagccttttcatttcactc |
42823619 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 5934210 - 5934254
Alignment:
| Q |
142 |
ggagttgtcaaatgaaggtgaaacttgttcaagttgttgatcact |
186 |
Q |
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| T |
5934210 |
ggaggtgtcaaatggaggtgaaacttgttcaagttgttgatcact |
5934254 |
T |
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