View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_low_23 (Length: 282)
Name: NF16527_low_23
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 40928146 - 40928420
Alignment:
| Q |
22 |
acaacaacgtagagaaggatgtgaatgagaatggatgaagcataaaacattaacatcgatgaatgaagtgaatctaatatgaaaaatggtcatattaatc |
121 |
Q |
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| T |
40928146 |
acaacaacgtagagaaggatgtgaatgagaatggatgaagcataaaacactaacatcgatgaatgaagtgaatctaatatgaaaaatggtcatattaatc |
40928245 |
T |
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| Q |
122 |
aacgacccttcacaattattataggnnnnnnnattaacaaatattagtataatcgg--------------tgtttgtttctgagatcaaattaaagaact |
207 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
40928246 |
aacgacccttcacaattattataggtttttttattaacaaatattagtataattagtgaatgtgtactaatgtttgtttctgagatcaaattaaagaact |
40928345 |
T |
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| Q |
208 |
cttacttaaaactcaattacaatatctcttaattcatcaactaaactagttacacggaactacaattgttatact |
282 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40928346 |
cttacttaaaactccactacaatatctcttaattcatcaactaaactagttacacggaactacaattgttatact |
40928420 |
T |
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