View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16527_low_4 (Length: 631)

Name: NF16527_low_4
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16527_low_4
NF16527_low_4
[»] chr7 (5 HSPs)
chr7 (254-621)||(3753085-3753452)
chr7 (1-222)||(3752832-3753053)
chr7 (254-621)||(4046786-4047153)
chr7 (1-222)||(4047185-4047406)
chr7 (6-127)||(9664309-9664430)
[»] chr6 (11 HSPs)
chr6 (4-145)||(6458406-6458547)
chr6 (15-135)||(6506526-6506646)
chr6 (15-154)||(6529220-6529359)
chr6 (10-135)||(6466373-6466498)
chr6 (15-135)||(6472058-6472178)
chr6 (31-135)||(6519604-6519708)
chr6 (15-127)||(6497721-6497833)
chr6 (33-123)||(6460857-6460947)
chr6 (15-123)||(6515107-6515215)
chr6 (33-127)||(7204144-7204239)
chr6 (33-127)||(7238895-7238990)
[»] chr4 (1 HSPs)
chr4 (6-127)||(13535333-13535454)


Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 254 - 621
Target Start/End: Original strand, 3753085 - 3753452
Alignment:
Q  254 ccatgttatctcatcctatagtgatcttggtgtgactctcgacattccctcttcaaatctaagattctttttagttagaggaagcccttttgtaactgct 353  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3753085 ccatgttatctcatcatatagtgatcttggtgtgactcttgacattccctcttcaaatctaagattctttttagttagaggaagcccttttataactgct 3753184  T
Q  354 tcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaactta 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753185 tcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaactta 3753284  T
Q  454 ataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccatttaccggtataatccgtat 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3753285 ataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccattttccggtataatccgtat 3753384  T
Q  554 catagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctgtctctg 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753385 catagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctgtctctg 3753452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3752832 - 3753053
Alignment:
Q  1 caaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752832 caaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctga 3752931  T
Q  101 atacattcacccttacctcatcaaatcctcaaacttttccctctctatttcctaccctcttcttctcttttcagcaacaatgttgtaccaagttttttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3752932 atacattcacccttacctcatcaaatcctcaaacttttccctctctatttcctaccctcttctcctcttttcagcaacaatgttgtaccaagttttttca 3753031  T
Q  201 ccagatctcacaatttcttcct 222  Q
    ||||||||||||||||| ||||    
T  3753032 ccagatctcacaatttcatcct 3753053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 254 - 621
Target Start/End: Complemental strand, 4047153 - 4046786
Alignment:
Q  254 ccatgttatctcatcctatagtgatcttggtgtgactctcgacattccctcttcaaatctaagattctttttagttagaggaagcccttttgtaactgct 353  Q
    ||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||    
T  4047153 ccatgttatttcatcttatagtgatcttggtgtgactcttgatattccctcttcaaacctaagattctttttggttagaggaagcccttttttaactgct 4047054  T
Q  354 tcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaactta 453  Q
    ||||||||||||||||   | ||||||||||||||| ||||||  ||| ||||||||||| | || ||  | ||||| |||||| ||||||||||||| |    
T  4047053 tcagttacaaaaccaatacctctttcaatcacaacaattcatagtataatttctttgtctccatttgataagaaaaaaaccaaatatacccttcaactca 4046954  T
Q  454 ataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccatttaccggtataatccgtat 553  Q
    |||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||  ||||  ||||||| ||||||| || |||||    
T  4046953 ataacaatcagacatggatcatatacacttcttcaccaatcaacttcaaccatgatggttccgaggttaaatccggtccattttccggtattattcgtat 4046854  T
Q  554 catagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctgtctctg 621  Q
    |   ||  ||||| || ||||   ||||||||||||||||||||| ||||||||||||||| ||||||    
T  4046853 cgcggttgttcctgattccaatggtgagaaaattcttgataaatttagctcttgttaccctatctctg 4046786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4047406 - 4047185
Alignment:
Q  1 caaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctga 100  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||| || ||||||||   || |||    
T  4047406 caaacccttcaaatttcttctcacaaaacttactatccacacctctccctacaaactcattcttccaaaattttgttctacaaaatggtgatcaacatga 4047307  T
Q  101 atacattcacccttacctcatcaaatcctcaaacttttccctctctatttcctaccctcttcttctcttttcagcaacaatgttgtaccaagttttttca 200  Q
    ||||||||||||||||||  ||||||||||||||| |||||| ||| |||| ||||||||||| ||||||||| || |||||||||||||||||||||||    
T  4047306 atacattcacccttaccttgtcaaatcctcaaactcttccctatctgtttcataccctcttctcctcttttcaacagcaatgttgtaccaagttttttca 4047207  T
Q  201 ccagatctcacaatttcttcct 222  Q
    |||||||| ||||| |||||||    
T  4047206 ccagatcttacaatatcttcct 4047185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 9664309 - 9664430
Alignment:
Q  6 ccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaataca 105  Q
    ||||| || |||||||| | ||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||  |  ||||||||    
T  9664309 ccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaataca 9664408  T
Q  106 ttcacccttacctcatcaaatc 127  Q
    |||||||||| ||| |||||||    
T  9664409 ttcacccttatctcgtcaaatc 9664430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 6458547 - 6458406
Alignment:
Q  4 acccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaata 103  Q
    ||||||||||||||||||| |  || || || ||  | || ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||| ||    
T  6458547 acccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagta 6458448  T
Q  104 cattcacccttacctcatcaaatcctcaaacttttccctctc 145  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  6458447 cattcacccttacctcatcaaatcctcaaacttctccctctc 6458406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 6506646 - 6506526
Alignment:
Q  15 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 114  Q
    |||||||| | ||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||| ||||    
T  6506646 ttcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatggtgatgcacctgaatactttcatcctt 6506547  T
Q  115 acctcatcaaatcctcaaact 135  Q
    ||||||||||||| |||||||    
T  6506546 acctcatcaaatcatcaaact 6506526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 6529359 - 6529220
Alignment:
Q  15 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 114  Q
    |||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| || |    
T  6529359 ttcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatggtgaccaacctgaatacattcatccat 6529260  T
Q  115 acctcatcaaatcctcaaacttttccctctctatttccta 154  Q
    | ||||||||||| ||| |||  || || |||||||||||    
T  6529259 atctcatcaaatcttcagactcatcactttctatttccta 6529220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 6466498 - 6466373
Alignment:
Q  10 caaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattca 109  Q
    ||||||||||||| | ||| || ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||  |||||||||||||||    
T  6466498 caaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattca 6466399  T
Q  110 cccttacctcatcaaatcctcaaact 135  Q
     || || ||||||||||| |||||||    
T  6466398 tccatatctcatcaaatcttcaaact 6466373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 6472058 - 6472178
Alignment:
Q  15 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 114  Q
    |||||||||| |||  | ||||||||||||||||||||||||||||||||||||||| |||| ||  | |||||||||  ||||||||||||||| ||||    
T  6472058 ttcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatggtgaccaacctgaatacattcatcctt 6472157  T
Q  115 acctcatcaaatcctcaaact 135  Q
    ||||||||||||| |||||||    
T  6472158 acctcatcaaatcatcaaact 6472178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 6519604 - 6519708
Alignment:
Q  31 tactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctc 130  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||  ||||||||| ||||| || |||||||| ||||| ||    
T  6519604 tactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatatattcatccatacctcattaaatcatc 6519703  T
Q  131 aaact 135  Q
    |||||    
T  6519704 aaact 6519708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 6497833 - 6497721
Alignment:
Q  15 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 114  Q
    ||||||||  |||| || ||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||  |||||||||  |||| ||||    
T  6497833 ttcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatcctt 6497734  T
Q  115 acctcatcaaatc 127  Q
    |||||||||||||    
T  6497733 acctcatcaaatc 6497721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 6460857 - 6460947
Alignment:
Q  33 ctatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatca 123  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||  ||| |||||| |||| |||||||||||||    
T  6460857 ctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatca 6460947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 6515107 - 6515215
Alignment:
Q  15 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 114  Q
    |||||||| | ||| || ||||| ||||||||||| ||||||||||||||||||||||||  ||||    | ||||| |||||||||||||| || ||||    
T  6515107 ttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatccatcctt 6515206  T
Q  115 acctcatca 123  Q
    |||||||||    
T  6515207 acctcatca 6515215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 7204144 - 7204239
Alignment:
Q  33 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 127  Q
    ||||||||||||| |||| || |  ||||||||||||||||||||||||  ||||||||||  ||||||||||||||| || |||||||| |||||    
T  7204144 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatc 7204239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 7238895 - 7238990
Alignment:
Q  33 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 127  Q
    ||||||||||||| |||| || |  ||||||||||||||||||||||||  ||||||||||  ||||||||||||||| || |||||||| |||||    
T  7238895 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatc 7238990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 13535333 - 13535454
Alignment:
Q  6 ccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaataca 105  Q
    ||||| || |||||||| | ||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||  |  ||||||||    
T  13535333 ccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaataca 13535432  T
Q  106 ttcacccttacctcatcaaatc 127  Q
    |||||||||| ||| |||||||    
T  13535433 ttcacccttatctcgtcaaatc 13535454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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