View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16527_low_7 (Length: 510)

Name: NF16527_low_7
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16527_low_7
NF16527_low_7
[»] chr7 (4 HSPs)
chr7 (19-99)||(696292-696371)
chr7 (118-159)||(696267-696308)
chr7 (432-477)||(5060850-5060895)
chr7 (420-477)||(28138761-28138818)
[»] chr6 (7 HSPs)
chr6 (401-477)||(14153356-14153432)
chr6 (401-473)||(32275771-32275843)
chr6 (423-477)||(23608429-23608483)
chr6 (399-477)||(31522533-31522611)
chr6 (466-499)||(14153355-14153388)
chr6 (372-473)||(17436042-17436143)
chr6 (466-499)||(35060939-35060972)
[»] chr3 (6 HSPs)
chr3 (431-477)||(44430420-44430466)
chr3 (432-473)||(47064870-47064911)
chr3 (432-477)||(4969877-4969922)
chr3 (400-477)||(6162681-6162758)
chr3 (466-499)||(47064865-47064898)
chr3 (402-477)||(15040683-15040758)
[»] chr4 (5 HSPs)
chr4 (401-470)||(37030918-37030987)
chr4 (401-476)||(24974146-24974221)
chr4 (401-477)||(628090-628166)
chr4 (416-476)||(40312809-40312869)
chr4 (416-476)||(40322885-40322945)
[»] chr2 (3 HSPs)
chr2 (416-477)||(20685008-20685069)
chr2 (440-477)||(939561-939598)
chr2 (381-477)||(18387243-18387339)
[»] chr1 (5 HSPs)
chr1 (416-477)||(3792298-3792359)
chr1 (432-477)||(45688310-45688355)
chr1 (466-499)||(3792297-3792330)
chr1 (402-477)||(28474794-28474869)
chr1 (401-477)||(28475982-28476058)
[»] scaffold0041 (1 HSPs)
scaffold0041 (401-477)||(23489-23565)
[»] chr5 (3 HSPs)
chr5 (434-477)||(6636935-6636978)
chr5 (413-477)||(17636346-17636410)
chr5 (402-477)||(34016004-34016079)
[»] chr8 (2 HSPs)
chr8 (399-477)||(9387928-9388006)
chr8 (401-477)||(9418589-9418665)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 696371 - 696292
Alignment:
Q  19 agtgatgttaaaaagataactccaaagataaggatataaagtagtacacctcaagatttttaagaactttatgaactcctt 99  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||    
T  696371 agtgatgtttaaaagataactccaaggataagggtataaagta-tacacctcaagatttttaagaacgttatgaactcctt 696292  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 696308 - 696267
Alignment:
Q  118 aacgttatgaactccttaaaaactaagtaaaaacatcaaact 159  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  696308 aacgttatgaactccttaaaaactaagtaaaaacatcaaact 696267  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 5060895 - 5060850
Alignment:
Q  432 cttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||| ||||||||||||| ||| ||||||||||||||| |||||    
T  5060895 cttttactttgggaatgagcggaaccatttggataatgagtagaat 5060850  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 28138818 - 28138761
Alignment:
Q  420 gggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    ||||||||  ||| |||| |||||||||||||| |||||||||| ||| |||||||||    
T  28138818 gggtattttggtcatttactttgggaatgagcaaaatcatttgggtaaagagcagaat 28138761  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 477
Target Start/End: Complemental strand, 14153432 - 14153356
Alignment:
Q  401 cgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    ||||||||||  || ||| ||||||||  ||| |||| |||||||||||||| |||||||||| |||||||||||||    
T  14153432 cgcatgttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaat 14153356  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 32275771 - 32275843
Alignment:
Q  401 cgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagca 473  Q
    |||||||||| |||  || ||| ||||||||| |||| ||||||||||||| ||| |||||||||||||||||    
T  32275771 cgcatgttaacttgcataggggcatttcagtcatttactttgggaatgagcggaaccatttggataatgagca 32275843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 23608483 - 23608429
Alignment:
Q  423 tatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    ||||| || |||||||||||||||||| | |||||||||| ||||||||||||||    
T  23608483 tattttagacttttattttgggaatgaacggaatcatttgaataatgagcagaat 23608429  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 477
Target Start/End: Original strand, 31522533 - 31522611
Alignment:
Q  399 aacgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||| ||||| ||| ||| ||| ||||| ||| |||| ||||||||||||| ||| ||||||| |||||||||||||    
T  31522533 aacgcaagttaacttgcgtaggggcatttcggtcatttactttgggaatgagcggaaccatttgggtaatgagcagaat 31522611  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 499
Target Start/End: Complemental strand, 14153388 - 14153355
Alignment:
Q  466 aatgagcagaatcatttgggtaatgagcagaatt 499  Q
    |||||||| |||||||||||||||||||||||||    
T  14153388 aatgagcaaaatcatttgggtaatgagcagaatt 14153355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 473
Target Start/End: Complemental strand, 17436143 - 17436042
Alignment:
Q  372 ttataactggcgcaagttaagttgcgcaacgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgag 471  Q
    |||||||| ||||| ||||| || ||| ||||| |||||  || |||  || |||| || |||||| ||||||||||||| ||| |||||| ||||||||    
T  17436143 ttataactagcgcatgttaacttacgctacgcaagttaacatgcgtagaggcattttagacttttactttgggaatgagcggaaccatttgaataatgag 17436044  T
Q  472 ca 473  Q
    ||    
T  17436043 ca 17436042  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 499
Target Start/End: Original strand, 35060939 - 35060972
Alignment:
Q  466 aatgagcagaatcatttgggtaatgagcagaatt 499  Q
    ||||||| ||||||||||||||||||||||||||    
T  35060939 aatgagcggaatcatttgggtaatgagcagaatt 35060972  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 44430466 - 44430420
Alignment:
Q  431 tcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    ||||||| |||||||||||||| || |||||||||||||||||||||    
T  44430466 tcttttactttgggaatgagcaaaaccatttggataatgagcagaat 44430420  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 47064911 - 47064870
Alignment:
Q  432 cttttattttgggaatgagcagaatcatttggataatgagca 473  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  47064911 cttttactttgggaatgagcagaatcatttgggtaatgagca 47064870  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 4969922 - 4969877
Alignment:
Q  432 cttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  4969922 cttttactttgggaatgagcggaaccatttgggtaatgagcagaat 4969877  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 477
Target Start/End: Original strand, 6162681 - 6162758
Alignment:
Q  400 acgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||||||||  || ||| ||| ||||  | |||||| ||||||||||||| ||| ||||||| |||||||||||||    
T  6162681 acgcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaat 6162758  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 499
Target Start/End: Complemental strand, 47064898 - 47064865
Alignment:
Q  466 aatgagcagaatcatttgggtaatgagcagaatt 499  Q
    ||||||||||||||||||||||||||||| ||||    
T  47064898 aatgagcagaatcatttgggtaatgagcataatt 47064865  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 477
Target Start/End: Complemental strand, 15040758 - 15040683
Alignment:
Q  402 gcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatc-atttggataatgagcagaat 477  Q
    |||||||||  || ||| ||| ||||||||| |||| ||||||||||||| ||||| |||||| |||||||||||||    
T  15040758 gcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagc-gaatccatttgggtaatgagcagaat 15040683  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 470
Target Start/End: Complemental strand, 37030987 - 37030918
Alignment:
Q  401 cgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatga 470  Q
    ||||| ||||||||||||||||||     |||||||| |||||||||||||| |||||||||| ||||||    
T  37030987 cgcatattaaattgtgtaagggtaaaaaggtcttttactttgggaatgagcaaaatcatttgggtaatga 37030918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 476
Target Start/End: Original strand, 24974146 - 24974221
Alignment:
Q  401 cgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaa 476  Q
    ||||||||||  || ||| ||| ||||| ||| |||| |||||||||||||| |  ||||||||||||||||||||    
T  24974146 cgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaatccatttggataatgagcagaa 24974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 477
Target Start/End: Complemental strand, 628166 - 628090
Alignment:
Q  401 cgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||||||| ||| |||||||||    ||||||||| ||| |||||||||  || ||||||| |||||||||||||    
T  628166 cgcatgttaagttgcgtaagggtaaaaaagtcttttactttaggaatgagcgaaaccatttgggtaatgagcagaat 628090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 476
Target Start/End: Original strand, 40312809 - 40312869
Alignment:
Q  416 gtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaa 476  Q
    ||||| |||||| || |||||| ||||| |||||||  |||||||||| ||||||||||||    
T  40312809 gtaagagtattttagacttttactttggaaatgagcgaaatcatttgggtaatgagcagaa 40312869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 476
Target Start/End: Original strand, 40322885 - 40322945
Alignment:
Q  416 gtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaa 476  Q
    ||||| |||||| || |||||| ||||| |||||||  |||||||||| ||||||||||||    
T  40322885 gtaagagtattttagacttttactttggaaatgagcgaaatcatttgggtaatgagcagaa 40322945  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 20685069 - 20685008
Alignment:
Q  416 gtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||||||||| || |||||| |||| |||||||| ||| ||||||| |||||||||||||    
T  20685069 gtaagggtattttagacttttactttgagaatgagcggaaccatttgggtaatgagcagaat 20685008  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 939598 - 939561
Alignment:
Q  440 ttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  939598 ttgggaatgagcggaatcatttgaataatgagcagaat 939561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 18387339 - 18387243
Alignment:
Q  381 gcgcaagttaagttgcgcaacgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||| ||||||  ||| |||||||||||  || ||||||| ||||  |   |||| ||||||||||||||||| ||||||  |||||||||||||    
T  18387339 gcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcatttttgatatttactttgggaatgagcagaaccatttgagtaatgagcagaat 18387243  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 3792359 - 3792298
Alignment:
Q  416 gtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    ||||||||||||  | | ||||||||| ||||||| |||||||||||| |||||||||||||    
T  3792359 gtaagggtattttggacatttattttgagaatgagtagaatcatttgggtaatgagcagaat 3792298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 45688355 - 45688310
Alignment:
Q  432 cttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||||    
T  45688355 cttttactttgggaatgagcagaaccatttggataatgagcggaat 45688310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 499
Target Start/End: Complemental strand, 3792330 - 3792297
Alignment:
Q  466 aatgagcagaatcatttgggtaatgagcagaatt 499  Q
    |||||| |||||||||||||||||||||||||||    
T  3792330 aatgagtagaatcatttgggtaatgagcagaatt 3792297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 477
Target Start/End: Complemental strand, 28474869 - 28474794
Alignment:
Q  402 gcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaat-catttggataatgagcagaat 477  Q
    |||||||||  || ||| ||| ||||||||| |||||||||||||||||  |||| ||||||| |||||||||||||    
T  28474869 gcatgttaacatgcgtaggggcatttcagtcatttattttgggaatgag-tgaatccatttgggtaatgagcagaat 28474794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 477
Target Start/End: Original strand, 28475982 - 28476058
Alignment:
Q  401 cgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    ||||||||||  |||||| ||| |||||  || |||| |||| |||||||| ||| ||||||| |||||||||||||    
T  28475982 cgcatgttaacatgtgtaggggcatttcgatcatttactttgagaatgagcggaaccatttgggtaatgagcagaat 28476058  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 477
Target Start/End: Complemental strand, 23565 - 23489
Alignment:
Q  401 cgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||||||| |||||||||||||     |||||||| |||| ||||||||| || |||||| ||||||||||||||    
T  23565 cgcatgttaagttgtgtaagggtaaaaaggtcttttactttgagaatgagcaaaaccatttgaataatgagcagaat 23489  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 477
Target Start/End: Original strand, 6636935 - 6636978
Alignment:
Q  434 tttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  6636935 tttattttgggaatgaacatattcatttggataatgagcagaat 6636978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 17636410 - 17636346
Alignment:
Q  413 tgtgtaagggtatttcagtcttttattttgggaatgagcagaatc-atttggataatgagcagaat 477  Q
    |||||| |||||||||| || |||||||||||||||||| ||||| |||| | |||||||||||||    
T  17636410 tgtgtaggggtatttcaatcatttattttgggaatgagc-gaatccatttaggtaatgagcagaat 17636346  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 477
Target Start/End: Complemental strand, 34016079 - 34016004
Alignment:
Q  402 gcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatc-atttggataatgagcagaat 477  Q
    |||||||||  |||||| ||| ||||||||| |||| ||||||||||||| ||||| |||| | |||||||||||||    
T  34016079 gcatgttaacatgtgtaggggcatttcagtcatttactttgggaatgagc-gaatccatttaggtaatgagcagaat 34016004  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 477
Target Start/End: Original strand, 9387928 - 9388006
Alignment:
Q  399 aacgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    ||||||||||||||||  ||||||||     ||||||||||||||||||||||| || ||||| | ||||||| |||||    
T  9387928 aacgcatgttaaattgcataagggtaaaaaggtcttttattttgggaatgagcaaaaccatttaggtaatgagtagaat 9388006  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 477
Target Start/End: Complemental strand, 9418665 - 9418589
Alignment:
Q  401 cgcatgttaaattgtgtaagggtatttcagtcttttattttgggaatgagcagaatcatttggataatgagcagaat 477  Q
    |||||||||| ||| |||||||||     |||||||| |||||||||||||  || ||||||| |||||||||||||    
T  9418665 cgcatgttaagttgcgtaagggtaaaatggtcttttactttgggaatgagcgaaaccatttgggtaatgagcagaat 9418589  T

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