View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16527_low_8 (Length: 502)
Name: NF16527_low_8
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Complemental strand, 32628253 - 32627782
Alignment:
| Q |
19 |
gaaaactctccccaaaagttttagtgttgttgcatgctcaaagctgaatttaaatccaactaaactaagttaatatgagatcaaagaagctcatagttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32628253 |
gaaaactctccccaaaagttttagcgttgttgcatgctcaaagctgaattcaaattcaactaaactaagttaatatgagatcaaagaagctcatagttgt |
32628154 |
T |
|
| Q |
119 |
aattagaaaaatgtacttgttttcttctaattttatgtgccgattgcatgtatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagcca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32628153 |
aattagaaaaatgtacttgttttcttctaattttatgtgccgatttcatgtatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagcca |
32628054 |
T |
|
| Q |
219 |
taaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32628053 |
taaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattat |
32627954 |
T |
|
| Q |
319 |
caaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatattt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32627953 |
caaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgacttcaacaccatattt |
32627854 |
T |
|
| Q |
419 |
aagtcccttgacattttcaaagaaaaactacttgaagaaatggggactgaaatgggtccatgcttcatctca |
490 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
32627853 |
acgtcccttgacattttcaaagaaaaactacttgatgaaatggggactgaaatgggtccatgcttcttctca |
32627782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 169 - 449
Target Start/End: Complemental strand, 32704331 - 32704047
Alignment:
| Q |
169 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
268 |
Q |
| |
|
|||| |||||||||| || | ||||||||||| ||||||||| ||||||||||| | ||||||||| || |||||| ||| ||||||| |||||||||| |
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|
| T |
32704331 |
tatatagcgaaaggtgatttctttgacaaaacttttgagagaagaagccataacaaacatgtacaataaaacactccccataagcttggcaattgcagat |
32704232 |
T |
|
| Q |
269 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
368 |
Q |
| |
|
|| |||||||||| |||| ||||||||||||||| ||||| ||||| |||||| |||||||||||| |||||||| | ||||||||||||||||| |||| |
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|
| T |
32704231 |
ttgggttgctcttatggaccaaacactttgttggcgatctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaat |
32704132 |
T |
|
| Q |
369 |
atat----gatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactac |
449 |
Q |
| |
|
|||| | | ||||||||||||||||| || || |||||||||| |||||| |||||| |||| ||||||||||| |||| |
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|
| T |
32704131 |
atatataaggtctttttgaacgatctaccagggaacgacttcaacaatgtatttaggtccctcgacacgttcaaagaaaatctac |
32704047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 206 - 431
Target Start/End: Complemental strand, 7298225 - 7298000
Alignment:
| Q |
206 |
agagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtga |
305 |
Q |
| |
|
||||||||||||||||| ||| | ||| ||| ||||| | ||||||| | |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
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|
| T |
7298225 |
agagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttgtgg |
7298126 |
T |
|
| Q |
306 |
tcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgactt |
405 |
Q |
| |
|
| | ||||||||||| |||||||| |||||||| | | || | || ||| ||||||||| || | ||||||||| || ||| | | ||||||||||| |
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|
| T |
7298125 |
tatcagatattatcatggttgtggagaagctttgccaacaattgaaccattcatctcccgagtacaagatattttttaatgatgtttctggaaatgactt |
7298026 |
T |
|
| Q |
406 |
caacaccatatttaagtcccttgaca |
431 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
7298025 |
caacaacatatttaagtcacttgaca |
7298000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 408
Target Start/End: Complemental strand, 32709952 - 32709802
Alignment:
| Q |
258 |
caattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataa |
357 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||| | | ||| ||||||| || |||||||||||||||||| | | |||||| | |
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|
| T |
32709952 |
caattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga |
32709853 |
T |
|
| Q |
358 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaa |
408 |
Q |
| |
|
|||||||||||| | | | || ||||||||| | ||||| || |||||||| |
|
|
| T |
32709852 |
atctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttcaa |
32709802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 459
Target Start/End: Complemental strand, 7293599 - 7293498
Alignment:
| Q |
358 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaa |
457 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||| | || ||||||||||||| ||| |||||||| ||||| | || ||| | ||||||||||| ||| |
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|
| T |
7293599 |
atctcccgaatacaagatcttttttaacgatctttcagggaatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaa |
7293500 |
T |
|
| Q |
458 |
at |
459 |
Q |
| |
|
|| |
|
|
| T |
7293499 |
at |
7293498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 169 - 482
Target Start/End: Complemental strand, 5811748 - 5811435
Alignment:
| Q |
169 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
268 |
Q |
| |
|
||||||||||||||| || | |||||||||| |||||||||| ||||| |||||||| | ||| ||||||||| | | ||||||| ||||||||||| |
|
|
| T |
5811748 |
tatacagcgaaaggtgatttctttgacaaaatctttgagagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcagac |
5811649 |
T |
|
| Q |
269 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
368 |
Q |
| |
|
|| |||||||||| |||| |||||||||| |||||||||| || |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5811648 |
ttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaacttaatcataaatctcccgaat |
5811549 |
T |
|
| Q |
369 |
atatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaaatggggactga |
468 |
Q |
| |
|
||| | |||||||||||||||||||||||||| |||||| | |||||| ||||||||||| |||||||||||||||| | | ||||||| ||||| |
|
|
| T |
5811548 |
ataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactacgtaatgaaatggaaactga |
5811449 |
T |
|
| Q |
469 |
aatgggtccatgct |
482 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
5811448 |
aatgggtccttgct |
5811435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 169 - 461
Target Start/End: Complemental strand, 27737067 - 27736775
Alignment:
| Q |
169 |
tatacagcgaaaggtaatatatttgacaaaacctttgagagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagac |
268 |
Q |
| |
|
||||||||||||||| || | ||| ||||||||||||||||| ||||| ||||||| | | || ||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
27737067 |
tatacagcgaaaggtgatttctttaacaaaacctttgagagacgaagctataaccaacctatattgcaacacacttcccagaagcttggcaattgcagac |
27736968 |
T |
|
| Q |
269 |
ttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaat |
368 |
Q |
| |
|
|| |||||||||| ||| |||||||| |||||||||| | ||| |||||||||| ||||||||| ||||||| | | | ||||||||||||| |||| |
|
|
| T |
27736967 |
ttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcatcatcataaatctcctgaat |
27736868 |
T |
|
| Q |
369 |
atatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaaatgg |
461 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| |||||||| ||||||| ||| ||||||| |
|
|
| T |
27736867 |
ataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacgtgatgaaatgg |
27736775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 261 - 444
Target Start/End: Original strand, 20115800 - 20115983
Alignment:
| Q |
261 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
360 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| | || | |||||| |||| |
|
|
| T |
20115800 |
ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc |
20115899 |
T |
|
| Q |
361 |
tcccgaatat-atgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaa |
444 |
Q |
| |
|
||| |||||| ||| | | ||||||||||||| | ||||| ||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
20115900 |
tcctgaatatgatg-tctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaa |
20115983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 261 - 447
Target Start/End: Complemental strand, 21943859 - 21943673
Alignment:
| Q |
261 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
360 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||| |||||||||||||||| || ||||| || ||||||||||||||||||| | | | |||||| |||| |
|
|
| T |
21943859 |
ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc |
21943760 |
T |
|
| Q |
361 |
tcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaact |
447 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||| || ||||||| | |||||| ||||||||| | |||||||||||||| |
|
|
| T |
21943759 |
tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaact |
21943673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 32534158 - 32534116
Alignment:
| Q |
35 |
agttttagtgttgttgcatgctcaaagctgaatttaaatccaa |
77 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
32534158 |
agttttaacgttgttgcatgctcaaagctgaatttgaatccaa |
32534116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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