View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16527_low_9 (Length: 491)
Name: NF16527_low_9
Description: NF16527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16527_low_9 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 14 - 491
Target Start/End: Complemental strand, 46926650 - 46926173
Alignment:
| Q |
14 |
caagactcttgtgagaaagtaattgagtgttgcatatttttctcaattccttccaaagtggtgaaatgggcatgaaagcaagactatactgctcatggtt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46926650 |
caagactcttgtgagaaagtaattgagtgttgcatatttttctcaattccttccaaagtggtgaaatgggcatgaaagcaagactatactgctcatggtt |
46926551 |
T |
|
| Q |
114 |
gagaactgacacagtttgaggtatgtttctctttgacaagaacttgtcattggttaggagaacctctttagccattgttgctgaggagataacaatagtg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46926550 |
gagaactgacacagtttgaggtatgtttctctttgacaagaacttgtcattggttaggagaacctctttagccattgttgctgaggagataacaatagtg |
46926451 |
T |
|
| Q |
214 |
gttatttggccaaacttgagactcattaaagggccatgaatttttgctagcttggccaatgacttgtgaggtttttctcctaattcaaggaggttcccta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46926450 |
gttatttggccaaacttgagactcattaaagggccatgaattttcgctagcttggccaatgacttgtgaggtttttctcctaattcaaggaggttcccta |
46926351 |
T |
|
| Q |
314 |
tgattggaagaggggaaggtcctggtggaagcttatagtttggtttagttattttagtaaggagtgaacaaagagcatgaatggataagcatgttaacag |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46926350 |
tgattggaagaggggaaggtcctggtggaagcttatagtttggtttagttattctagtaaggagtgaataaagagcatgaatggataagcatgttaacag |
46926251 |
T |
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| Q |
414 |
aaaaacaagagtacaacttacaaagtccattgtttcttgaaaatgatgatctcaatgtgagtgaatattgtgttgatg |
491 |
Q |
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| T |
46926250 |
aaaaacaagagtacaacttacaaagtccattgtttcttgaaaatgatgatctcaatgtgagtgaatattgtgttgatg |
46926173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 11107408 - 11107825
Alignment:
| Q |
14 |
caagactcttgtgagaaagtaattgagtgttgcatatttttctcaattccttccaaagtggtgaaatgggcatgaaagcaagactatactgctcatggtt |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| || |||||||| |
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| T |
11107408 |
caagactcttatgagaaagtaattgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggtgtgaatgcaagactatattggtcatggtt |
11107507 |
T |
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| Q |
114 |
gagaactgacacagtttgaggtatgtttctctttgacaagaacttgtcattggttaggagaacctctttagccattgttgctgaggagataacaatagtg |
213 |
Q |
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| T |
11107508 |
gagaactgacacagattgtggaacagtcctatttgacaagaatttgtcattggtgagaagaacttgtttggccattgttgatgaagagataacaacagtg |
11107607 |
T |
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| Q |
214 |
gttatttggccaaacttgagactcattaaagggccatgaatttttgctagcttggccaatgacttgtgaggtttttctcctaattcaaggaggttcccta |
313 |
Q |
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|||||||| || | |||||||||||||||||| |||| ||||| || || || |||||||| ||||| || |||| ||||||||||||||||||||||| |
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| T |
11107608 |
gttatttgccctagcttgagactcattaaaggaccatatattttggcaagtttagccaatgatttgtggggcttttgtcctaattcaaggaggttcccta |
11107707 |
T |
|
| Q |
314 |
tgattggaagaggggaaggtcctggtggaagcttatagtttggtttagttattttagtaaggagtgaacaaagagcatgaatggataagcatgttaacag |
413 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||| ||| || | |||| ||| | |||| | |||||||| || |||||||||| |
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| T |
11107708 |
tgatgggaagaggggaaggtcctggtggaagcttataggttggttttgttgttcttttaagtagtaagcaaaaaacatgaatgaatgcacatgttaacac |
11107807 |
T |
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| Q |
414 |
aaaaacaagagtacaact |
431 |
Q |
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| T |
11107808 |
aagaacaagtgtacaact |
11107825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 46933515 - 46933170
Alignment:
| Q |
14 |
caagactcttgtgagaaagtaattgagtgttgcatatttttctcaattccttccaaagtggtgaaatgggcatgaaagcaagactatactgctcatggtt |
113 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||| ||||| ||||| |
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| T |
46933515 |
caagagtcttgtgagaaaataattgagtgttgcatatttttctcaattccttccaaagaggtgcaactggtatgaaagcaagactataatgctcgtggtt |
46933416 |
T |
|
| Q |
114 |
gagaactgacacagtttgaggtatgtttctctttgacaagaacttgtcattggttaggagaacctctttagccattgttgctgaggagataacaatagtg |
213 |
Q |
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|||||| ||||||| ||| || ||| |||| || |||||||||| ||||||||| || || ||||| || ||||| | |||||||||| || | |||| |
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| T |
46933415 |
gagaaccgacacagattgtggaatggttctattagacaagaactggtcattggtcagaagcacctcctttgccatgttggctgaggagacgacgacagtg |
46933316 |
T |
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| Q |
214 |
gttatttggccaaacttgagactcattaaagggccatgaatttttgctagcttggccaatgacttgtgaggtttttctcctaattcaaggaggttcccta |
313 |
Q |
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|||||| |||||||||||||||| |||| || |||||||| |||| || ||||| || || ||||||||||||||||||||||||||||||||||||| |
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| T |
46933315 |
gttattcggccaaacttgagacttattatagaaccatgaatctttgtaagattggctaaggatttgtgaggtttttctcctaattcaaggaggttcccta |
46933216 |
T |
|
| Q |
314 |
tgattggaagaggggaaggtcctggtggaagcttatagtttggttt |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933215 |
tgattggaagaggggaaggtcctggtggaagcttatagtttggttt |
46933170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 2847 - 3264
Alignment:
| Q |
14 |
caagactcttgtgagaaagtaattgagtgttgcatatttttctcaattccttccaaagtggtgaaatgggcatgaaagcaagactatactgctcatggtt |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| || |||||||| |
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| T |
2847 |
caagactcttatgagaaagtaattgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggtgtgaatgcaagactatattggtcatggtt |
2946 |
T |
|
| Q |
114 |
gagaactgacacagtttgaggtatgtttctctttgacaagaacttgtcattggttaggagaacctctttagccattgttgctgaggagataacaatagtg |
213 |
Q |
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|||||||||||||| ||| || | | || ||||||||||| ||||||||||| || ||||| | ||| |||||||||| ||| |||||||||| |||| |
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| T |
2947 |
gagaactgacacagattgtggaacagtcctatttgacaagaatttgtcattggtgagaagaacttgtttggccattgttgatgaagagataacaacagtg |
3046 |
T |
|
| Q |
214 |
gttatttggccaaacttgagactcattaaagggccatgaatttttgctagcttggccaatgacttgtgaggtttttctcctaattcaaggaggttcccta |
313 |
Q |
| |
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|||||||| || | |||||||||||||||||| |||| ||||| || || || |||||||| ||||| || |||| ||||||||||||||||||||||| |
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| T |
3047 |
gttatttgccctagcttgagactcattaaaggaccatatattttggcaagtttagccaatgatttgtggggcttttgtcctaattcaaggaggttcccta |
3146 |
T |
|
| Q |
314 |
tgattggaagaggggaaggtcctggtggaagcttatagtttggtttagttattttagtaaggagtgaacaaagagcatgaatggataagcatgttaacag |
413 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||| ||| || | |||| ||| | |||| | |||||||| || |||||||||| |
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| T |
3147 |
tgatgggaagaggggaaggtcctggtggaagcttataggttggttttgttgttcttttaagtagtaagcaaaaaacatgaatgaatgcacatgttaacac |
3246 |
T |
|
| Q |
414 |
aaaaacaagagtacaact |
431 |
Q |
| |
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|| |||||| |||||||| |
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| T |
3247 |
aagaacaagtgtacaact |
3264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 29975388 - 29975458
Alignment:
| Q |
277 |
ttgtgaggtttttctcctaattcaaggaggttccctatgattggaagaggggaaggtcctggtggaagctt |
347 |
Q |
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||||||||||||| ||||||| ||||||||| ||||||| |||||||| | |||||||||||||||||| |
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| T |
29975388 |
ttgtgaggttttttccctaattgaaggaggtttcctatgaagggaagaggagtaggtcctggtggaagctt |
29975458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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