View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16528_high_16 (Length: 272)

Name: NF16528_high_16
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16528_high_16
NF16528_high_16
[»] chr4 (5 HSPs)
chr4 (1-265)||(26647234-26647518)
chr4 (5-42)||(13669607-13669644)
chr4 (5-42)||(13682464-13682501)
chr4 (1-36)||(13687147-13687182)
chr4 (1-36)||(13689099-13689134)
[»] chr8 (3 HSPs)
chr8 (1-167)||(37002075-37002241)
chr8 (1-139)||(36992362-36992500)
chr8 (166-265)||(37002274-37002373)
[»] chr7 (1 HSPs)
chr7 (1-69)||(8596989-8597057)
[»] chr3 (2 HSPs)
chr3 (169-253)||(27442791-27442874)
chr3 (169-253)||(27445947-27446030)
[»] chr1 (1 HSPs)
chr1 (169-253)||(12796262-12796345)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 26647234 - 26647518
Alignment:
Q  1 acaaaacatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcatcaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  26647234 acaaaacatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagactcctacaaaagcataaaat 26647333  T
Q  101 acaaacttagactcctacaacgtttgtacaacatctgtactgttgaaactgatttacttagctat---------------------attattcctatttc 179  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||                     ||||||||||||||    
T  26647334 acaaacttagactcctgcaacgttggtacaacatttgtactgttgaaa-tgatttacttagctatattgttcctatcctgtaattaattattcctatttc 26647432  T
Q  180 taaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26647433 taaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctc 26647518  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 13669644 - 13669607
Alignment:
Q  5 aacatgggtttcaaaatttcatttctcataaattaaga 42  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13669644 aacatgggtttcaaaatttcatttctcataaattaaga 13669607  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 13682501 - 13682464
Alignment:
Q  5 aacatgggtttcaaaatttcatttctcataaattaaga 42  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13682501 aacatgggtttcaaaatttcatttctcataaattaaga 13682464  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13687182 - 13687147
Alignment:
Q  1 acaaaacatgggtttcaaaatttcatttctcataaa 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  13687182 acaaaacatgggttccaaaatttcatttctcataaa 13687147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13689134 - 13689099
Alignment:
Q  1 acaaaacatgggtttcaaaatttcatttctcataaa 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  13689134 acaaaacatgggttccaaaatttcatttctcataaa 13689099  T

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Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 37002075 - 37002241
Alignment:
Q  1 acaaaacatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcatcaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  37002075 acaaaacatgggtttcaaaatttcatttctcataaattaagagtataacatttaaattcacaacatttatacaacatagactcctacaaaagcatcaaat 37002174  T
Q  101 acaaacttagactcctacaacgtttgtacaacatctgtactgttgaaactgatttacttagctatat 167  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37002175 acaaacttagactcctgcaacgtttgtacaacatttgtactgttgaaactgatttacttagctatat 37002241  T

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Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 36992362 - 36992500
Alignment:
Q  1 acaaaacatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttgtacaacatagacttctacaaaagcatcaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36992362 acaaaacatgggtttcaaaatttcatttctcataaattaagagtatcacatttaaattcacaacatttgtacaacatagactcctacaaaagcatcaaat 36992461  T
Q  101 acaaacttagactcctacaacgtttgtacaacatctgta 139  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  36992462 acaaacttagactcctgcaacgtttgtacaacatttgta 36992500  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 37002274 - 37002373
Alignment:
Q  166 attattcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagtggttttcatctc 265  Q
    ||||||||||||| | ||| ||||| | |||||||||||||||  ||||||||||||| ||| ||| | || |||||||||||||||| |||||||||||    
T  37002274 attattcctatttgttagggagtgctaatggaattgacttagtgtttccacaattcacatttaagttagtgtagtcattttatttagttgttttcatctc 37002373  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8596989 - 8597057
Alignment:
Q  1 acaaaacatgggtttcaaaatttcatttctcataaattaagaatatcacatttaaattcacaacatttg 69  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8596989 acaaaacatgggttccaaaatttcatttctcataaattaagagtatcacatttaaattcacaacatttg 8597057  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 27442791 - 27442874
Alignment:
Q  169 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 253  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  27442791 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 27442874  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 27445947 - 27446030
Alignment:
Q  169 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 253  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  27445947 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 27446030  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 12796262 - 12796345
Alignment:
Q  169 attcctatttctaaggaagtgccagtggaattgacttagtccttccacaattcacgttttagtcaatggagtcattttatttagt 253  Q
    |||||||||| | |||||| |  ||||| |||||||||||  |||||| ||||||| |||||| | |||||||||||| ||||||    
T  12796262 attcctatttgttaggaagggatagtgggattgacttagttgttccactattcacg-tttagttagtggagtcattttgtttagt 12796345  T

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