View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16528_high_2 (Length: 816)

Name: NF16528_high_2
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16528_high_2
NF16528_high_2
[»] chr1 (5 HSPs)
chr1 (351-696)||(3144156-3144501)
chr1 (156-301)||(3144550-3144694)
chr1 (748-790)||(21444802-21444844)
chr1 (747-792)||(22103828-22103873)
chr1 (689-788)||(42267304-42267405)
[»] chr2 (4 HSPs)
chr2 (691-792)||(11689544-11689647)
chr2 (691-792)||(11721412-11721515)
chr2 (740-790)||(11689762-11689812)
chr2 (740-790)||(11721247-11721297)
[»] chr4 (4 HSPs)
chr4 (740-796)||(7280424-7280480)
chr4 (689-790)||(11857893-11857996)
chr4 (740-790)||(7280263-7280313)
chr4 (748-790)||(11858113-11858155)
[»] chr8 (2 HSPs)
chr8 (689-790)||(11291028-11291131)
chr8 (691-790)||(22890101-22890201)
[»] scaffold0181 (1 HSPs)
scaffold0181 (748-790)||(9427-9469)
[»] chr3 (2 HSPs)
chr3 (748-792)||(30380908-30380952)
chr3 (740-790)||(14633906-14633956)
[»] chr6 (2 HSPs)
chr6 (747-790)||(33648629-33648672)
chr6 (748-790)||(1215069-1215111)
[»] scaffold0100 (1 HSPs)
scaffold0100 (748-790)||(31082-31124)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 351 - 696
Target Start/End: Complemental strand, 3144501 - 3144156
Alignment:
Q  351 cgtgttaaggtaatgaaggaaatgaatgcagttaataatgttagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc 450  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144501 cgtgttaaggtaatgaaggaaatgaatgcagttaataatgtaagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc 3144402  T
Q  451 cgccttatttgcttaaaaccaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc 550  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144401 cgccttatttgcttaaaactaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc 3144302  T
Q  551 tgctgtttctttctttctattctctattctgagccaaacacactttctctgccaacttaatcatgatcgttcccaccctctgacgcctttgtcgatcaat 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144301 tgctgtttctttctttctattctctattctgagccaaacacactttctctgccaacttaatcatgatcgttcccaccctctgacgcctttgtcgatcaat 3144202  T
Q  651 acatacatagatacaactacaaatatacattgtatactgcttttat 696  Q
    ||||||||  ||||||||||||||||||||| ||||||||||||||    
T  3144201 acatacatgtatacaactacaaatatacattctatactgcttttat 3144156  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 3144694 - 3144550
Alignment:
Q  156 taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttcannnnnnnnnnnnnnnnnncttgaaaaccaaacaaa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||    
T  3144694 taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttca-tttttgtttctttttttcttgaaaaccaaacaaa 3144596  T
Q  256 gaaagtagggtcacgtatgttgagaagtaagacagtgaaagaaagc 301  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  3144595 gaaagtaggatcacgtatgttgagaagtaagacagtgaaagaaagc 3144550  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 748 - 790
Target Start/End: Complemental strand, 21444844 - 21444802
Alignment:
Q  748 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  21444844 ttaatcctggcattttgccgtgtcaaaatttaatcacttaaaa 21444802  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 792
Target Start/End: Complemental strand, 22103873 - 22103828
Alignment:
Q  747 tttaatcctggcattttgtcatgtcaaaatttaatcacttaaaatt 792  Q
    ||||||||||  |||||| | |||||||||||||||||||||||||    
T  22103873 tttaatcctgctattttgccctgtcaaaatttaatcacttaaaatt 22103828  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 788
Target Start/End: Original strand, 42267304 - 42267405
Alignment:
Q  689 gcttttatacgtgtttagtccctaaaactagaggtcatttaaaa-ttgatcg-tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcactt 786  Q
    ||||||||| ||||||| |||||  || ||| |||||||||||| ||| ||  |||| |||||||||||| || |||||| || ||||||||||||| ||    
T  42267304 gcttttatatgtgtttattccctgcaaataggggtcatttaaaaattggtccctgtattctttaatcctgacaatttgtcctgccaaaatttaatcattt 42267403  T
Q  787 aa 788  Q
    ||    
T  42267404 aa 42267405  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 691 - 792
Target Start/End: Original strand, 11689544 - 11689647
Alignment:
Q  691 ttttatacgtgtttagtccctaaaactagaggtcatttaaaa-ttgatcg-tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaa 788  Q
    ||||||| ||||||||||| |  || ||| |||||||||||| ||||||  |||| |||||||||| ||||||||||| || ||||||||||||||||||    
T  11689544 ttttatatgtgtttagtccttggaaataggggtcatttaaaaattgatccctgtattctttaatcccggcattttgtcctgccaaaatttaatcacttaa 11689643  T
Q  789 aatt 792  Q
    ||||    
T  11689644 aatt 11689647  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 691 - 792
Target Start/End: Complemental strand, 11721515 - 11721412
Alignment:
Q  691 ttttatacgtgtttagtccctaaaactagaggtcatttaaaa-ttgatcg-tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaa 788  Q
    ||||||| ||||||||||  |  || ||| |||||||||||| ||||||  |||| |||||||||||| |||||| || || ||||||||||||||||||    
T  11721515 ttttatatgtgtttagtctttggaaataggggtcatttaaaaattgatccctgtattctttaatcctgacattttatcctgccaaaatttaatcacttaa 11721416  T
Q  789 aatt 792  Q
    ||||    
T  11721415 aatt 11721412  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 790
Target Start/End: Complemental strand, 11689812 - 11689762
Alignment:
Q  740 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    |||| ||||||||||| ||| |||||| || ||||||||||||||||||||    
T  11689812 tgtattctttaatcctagcaatttgtcctgccaaaatttaatcacttaaaa 11689762  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 11721247 - 11721297
Alignment:
Q  740 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    |||| ||||||||||| |||||||| | || ||||||||||||||||||||    
T  11721247 tgtattctttaatcctagcattttgccctgccaaaatttaatcacttaaaa 11721297  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 740 - 796
Target Start/End: Complemental strand, 7280480 - 7280424
Alignment:
Q  740 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaattatgt 796  Q
    |||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  7280480 tgtattctttaattctgacattttgccatgtcaaaatttaatcacttaaaattatgt 7280424  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 790
Target Start/End: Original strand, 11857893 - 11857996
Alignment:
Q  689 gcttttatacgtgtttagtccctaaaactagaggtcatttaaaa--ttgatcgtgtaatctttaatcctggcattttgtcatgtcaaaatttaatcactt 786  Q
    ||||||||| |||||||||||||  || ||||||||||||||||  | |  | |||| || |||||||||||||||||   || ||||||||||||||||    
T  11857893 gcttttatatgtgtttagtccctgcaaatagaggtcatttaaaaaatggtccctgtattccttaatcctggcattttgctctgccaaaatttaatcactt 11857992  T
Q  787 aaaa 790  Q
    ||||    
T  11857993 aaaa 11857996  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 7280263 - 7280313
Alignment:
Q  740 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    |||| |||||||||||| ||||||| | |||||||||||||||||||||||    
T  7280263 tgtattctttaatcctgtcattttgccctgtcaaaatttaatcacttaaaa 7280313  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 748 - 790
Target Start/End: Complemental strand, 11858155 - 11858113
Alignment:
Q  748 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    ||||||||||||||||  | |||||||||||||||||||||||    
T  11858155 ttaatcctggcattttaccctgtcaaaatttaatcacttaaaa 11858113  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 790
Target Start/End: Original strand, 11291028 - 11291131
Alignment:
Q  689 gcttttatacgtgtttagtccctaaaactagaggtcatttaaaa--ttgatcgtgtaatctttaatcctggcattttgtcatgtcaaaatttaatcactt 786  Q
    ||||||||||||||||||| |||| || |||  |||||||||||  | | || |||| || |||||||||  |||||| |||| ||||||||||||||||    
T  11291028 gcttttatacgtgtttagttcctacaaataggagtcatttaaaaaatggttcttgtattccttaatcctgatattttgccatgccaaaatttaatcactt 11291127  T
Q  787 aaaa 790  Q
    ||||    
T  11291128 aaaa 11291131  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 691 - 790
Target Start/End: Original strand, 22890101 - 22890201
Alignment:
Q  691 ttttatacgtgtttagtccctaaaactagaggtcatttaaaat-tgatcgtgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaa 789  Q
    ||||||| ||||||||||||   || ||| ||||||||||||  || || |||| || |||||| || |||||||||  |||||||||||||||||||||    
T  22890101 ttttatatgtgtttagtcccggtaaataggggtcatttaaaaaatggtcttgtattccttaatcatgacattttgtcccgtcaaaatttaatcacttaaa 22890200  T
Q  790 a 790  Q
    |    
T  22890201 a 22890201  T

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Target: scaffold0181 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 748 - 790
Target Start/End: Complemental strand, 9469 - 9427
Alignment:
Q  748 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  9469 ttaatcctggtattttgtcctgtcaaaatttaatcacttaaaa 9427  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 792
Target Start/End: Original strand, 30380908 - 30380952
Alignment:
Q  748 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaatt 792  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||    
T  30380908 ttaatcctgatattttgtcatgtcaaaatttaatcatttaaaatt 30380952  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 740 - 790
Target Start/End: Original strand, 14633906 - 14633956
Alignment:
Q  740 tgtaatctttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    |||| |||||||||||| ||||||||| |  ||||||||||||||||||||    
T  14633906 tgtattctttaatcctgacattttgtcctaccaaaatttaatcacttaaaa 14633956  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 747 - 790
Target Start/End: Original strand, 33648629 - 33648672
Alignment:
Q  747 tttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    ||||||| ||| |||||||||||| |||||||||||||||||||    
T  33648629 tttaatcatggtattttgtcatgtgaaaatttaatcacttaaaa 33648672  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 748 - 790
Target Start/End: Original strand, 1215069 - 1215111
Alignment:
Q  748 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    ||||||||| ||||||| | |||||||||||||||||||||||    
T  1215069 ttaatcctgacattttgccctgtcaaaatttaatcacttaaaa 1215111  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 748 - 790
Target Start/End: Original strand, 31082 - 31124
Alignment:
Q  748 ttaatcctggcattttgtcatgtcaaaatttaatcacttaaaa 790  Q
    ||||| |||||| |||||| |||||||||||||||||||||||    
T  31082 ttaattctggcaatttgtcctgtcaaaatttaatcacttaaaa 31124  T

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