View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_high_20 (Length: 225)
Name: NF16528_high_20
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 52001535 - 52001745
Alignment:
| Q |
1 |
cgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001535 |
cgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagt |
52001634 |
T |
|
| Q |
101 |
tttgaaacccaagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggagttggag |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001635 |
tttgaaacccaagtaagggattcatcgacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggagttggag |
52001734 |
T |
|
| Q |
201 |
aatcatcatca |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
52001735 |
aatcatcatca |
52001745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 52011409 - 52011610
Alignment:
| Q |
10 |
tccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagttttgaaacc |
109 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||||||| ||| |||||||| | || ||| ||||||| |||||||| || || ||| | |||| |
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|
| T |
52011409 |
tccatcagcatggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctccgtttcttttcggaacc |
52011508 |
T |
|
| Q |
110 |
caagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggagttggagaatcatcat |
209 |
Q |
| |
|
||| ||| |||||| | ||||| ||| |||| |||||||| | ||||||||| ||||||||||||| ||||| ||||||||| ||||||||| |||||| |
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|
| T |
52011509 |
caaataaaggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgcttcagagaaaggtgttggagaagcatcat |
52011608 |
T |
|
| Q |
210 |
ca |
211 |
Q |
| |
|
|| |
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|
| T |
52011609 |
ca |
52011610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 51988087 - 51987888
Alignment:
| Q |
12 |
catcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagttttgaaaccca |
111 |
Q |
| |
|
||||| |||| || |||||||| ||||| ||| |||| ||| ||||||||||| || |||| | | | |||||||| |||| | ||||||| ||| |
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| T |
51988087 |
catcagcatggttcgcaagaatgttaaggcacaattcttgcaatgaaggaacactaaagcttctcttttccaaatcttcttcattgaattttgaatgcca |
51987988 |
T |
|
| Q |
112 |
agtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggagttggagaatcatcatca |
211 |
Q |
| |
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| |||| ||||||||||||| ||| |||| ||||||| | |||| ||||||||||||||| | ||||||||||||||| ||||||||| |||||||| |
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|
| T |
51987987 |
aataagagattcatcaacaagcccttttttcatgcttttggcgattctttcttgaatagctttaattgctttagagaaaggtgttggagaaccatcatca |
51987888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 11749218 - 11749419
Alignment:
| Q |
10 |
tccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagttttgaaacc |
109 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||| |||| || |||||||||||| || |||| |||| |||||||| |||||| ||| | |||| |
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|
| T |
11749218 |
tccatcaacatgattagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaacc |
11749317 |
T |
|
| Q |
110 |
caagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaaggagttggagaatcatcat |
209 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| ||| |||| | ||||||||||||||||||||||| || || |||||||||||||||||| |||||| |
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|
| T |
11749318 |
caaataagggattcatcaacaaaccccattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcat |
11749417 |
T |
|
| Q |
210 |
ca |
211 |
Q |
| |
|
|| |
|
|
| T |
11749418 |
ca |
11749419 |
T |
|
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