View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16528_high_3 (Length: 634)
Name: NF16528_high_3
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 339 - 616
Target Start/End: Complemental strand, 46707878 - 46707601
Alignment:
| Q |
339 |
tatagcaatgaaaatatgtatacgacgagctgttttactatcaatatcgtggtctggaaatatactcttatagcgtgtatacgatgaacagttttttcaa |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46707878 |
tatagcaatgaaaatatgtatacgacgagctgttttactatcaatatcgtggtctggaaatttactcttatagcgtgtatacgatgaacagttttttcaa |
46707779 |
T |
|
| Q |
439 |
tataccatgcttggattcatacggaattacttaatgctgactgttccatttatattgcagttacttgatagctgcaatgggtttacaagccatttggagt |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46707778 |
tataccatgcttggattcatacggaattacttaatgctgactgttccatttatattgcagttacttgatagctgcaatgggtttacaagccatttggagt |
46707679 |
T |
|
| Q |
539 |
tttgtgcttgctttaatggatgcatacgctgtggtgagaaggaaagtccttcacaaccctgtacttgtttgcctctat |
616 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46707678 |
tttgtgcttgctttaatggacgcatacgctgtggtgagaaggaaagtccttcacaaccctgtactggtttgcctctat |
46707601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 339 - 603
Target Start/End: Complemental strand, 37543727 - 37543463
Alignment:
| Q |
339 |
tatagcaatgaaaatatgtatacgacgagctgttttactatcaatatcgtggtctggaaatatactcttatagcgtgtatacgatgaacagttttttcaa |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37543727 |
tatagcaatgaaaatatgtatacgacgagctgttttactatcaatatcgtggtctggaaatttacacttatagcgtgtatacgatgaacagttttttcaa |
37543628 |
T |
|
| Q |
439 |
tataccatgcttggattcatacggaattacttaatgctgactgttccatttatattgcagttacttgatagctgcaatgggtttacaagccatttggagt |
538 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37543627 |
tataccatgcttggattcatatggaattacttaatgctgactgttccatttgtattgcagttacttgatagctgcaatgggtttacaagccatttggagt |
37543528 |
T |
|
| Q |
539 |
tttgtgcttgctttaatggatgcatacgctgtggtgagaaggaaagtccttcacaaccctgtact |
603 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
37543527 |
tttgtgcttgctttaatggatgcatacactctggtgagaaggaaagtccttcacaaccctgtact |
37543463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 354 - 616
Target Start/End: Original strand, 32867896 - 32868155
Alignment:
| Q |
354 |
atgtatacgacgagctgttttactatcaatatcgtggtctggaaatatactcttatagcgtgtatacgatgaacagttttttcaatataccatgcttgga |
453 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32867896 |
atgtatacgacgggctgttttactatcaatatcgtggtcgggagatttactcttatagcgtgtatacgatgaacagttttttcaatata---tgcttgga |
32867992 |
T |
|
| Q |
454 |
ttcatacggaattacttaatgctgactgttccatttatattgcagttacttgatagctgcaatgggtttacaagccatttggagttttgtgcttgcttta |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32867993 |
ttcatacggaattacttaatgctgactgttccatttgtattgcagttacttgatagctgcaatgggtttacaagccatttggagttttgtgcttgcttta |
32868092 |
T |
|
| Q |
554 |
atggatgcatacgctgtggtgagaaggaaagtccttcacaaccctgtacttgtttgcctctat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
32868093 |
atggatgcatacgctgtggtgagaaggaaagttcttcacaaccctgtactggtttgcctctat |
32868155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 32867616 - 32867826
Alignment:
| Q |
26 |
ttgttctgtttatgattttttgggctttcaccgtttgtgatcttcctactatgcttaaatatatgctttgtcttacactgaaaatggtatgttttcgctc |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32867616 |
ttgttctgtttatgattttttgggctttcaccgtttgtgatcttcctactatgcttaaatatatgctttgtcttacactgaaaatggtatgttttcgctc |
32867715 |
T |
|
| Q |
126 |
tccatgcaaatggggacttagctggctgtggaattctgaataaaacgaaatcagattaactgagaatgtagctgtagacagcttggagatggagacaaga |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32867716 |
tccatgcaaatggggacttagctggctgtggaattctga---------------attaactgagaatgtagctgtagacagcttggagatggagacaaga |
32867800 |
T |
|
| Q |
226 |
aagagaaatgtgtcggccaaacatcc |
251 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
32867801 |
aagagaaatgtgttggccaaacatcc |
32867826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 444 - 616
Target Start/End: Original strand, 32902848 - 32903020
Alignment:
| Q |
444 |
catgcttggattcatacggaattacttaatgctgactgttccatttatattgcagttacttgatagctgcaatgggtttacaagccatttggagttttgt |
543 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| | ||| |||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32902848 |
catgcttgaattcatatggaattacttaatgttaactattccatttgtaatgcagttacttggtagctgcaatgggtttacaagccatttggagttttct |
32902947 |
T |
|
| Q |
544 |
gcttgctttaatggatgcatacgctgtggtgagaaggaaagtccttcacaaccctgtacttgtttgcctctat |
616 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| ||||||||| |||||||| | ||||||| |||||||| |
|
|
| T |
32902948 |
tcttgctttgatggatgcatacgccgtggtgagaaagaaagtcctccacaaccccgcacttgttagcctctat |
32903020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 480 - 564
Target Start/End: Complemental strand, 16323246 - 16323163
Alignment:
| Q |
480 |
tgttccatttatattgcagttacttgatagctgcaatgggtttacaagccatttggagttttgtgcttgctttaatggatgcata |
564 |
Q |
| |
|
|||||||||| | |||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
16323246 |
tgttccattttt-ttgcagtttcttgatagcgtcaatggctttacaaatcatttggagttttgtgcttgctttgttggatgcata |
16323163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 32867819 - 32867855
Alignment:
| Q |
261 |
aaacatccctgaaatgcgagataactgcacaacatca |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32867819 |
aaacatccctgaaatgcgagataactgcacaacatca |
32867855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 32902550 - 32902603
Alignment:
| Q |
126 |
tccatgcaaatggggacttagctggctgtggaattctgaataaaacgaaatcag |
179 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
32902550 |
tccatgcaaatggcgacttagctggaagaggaattctgaataaaatgaaatcag |
32902603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University