View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16528_high_6 (Length: 542)

Name: NF16528_high_6
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16528_high_6
NF16528_high_6
[»] chr2 (3 HSPs)
chr2 (144-312)||(9216474-9216642)
chr2 (11-128)||(38992699-38992816)
chr2 (455-528)||(9216258-9216331)
[»] chr3 (3 HSPs)
chr3 (11-128)||(45903307-45903424)
chr3 (81-128)||(41570068-41570115)
chr3 (81-123)||(17229749-17229790)
[»] chr7 (5 HSPs)
chr7 (11-122)||(14792430-14792541)
chr7 (11-122)||(4926194-4926305)
chr7 (16-122)||(19680936-19681042)
chr7 (15-85)||(41985279-41985349)
chr7 (14-84)||(7260348-7260418)
[»] chr6 (3 HSPs)
chr6 (11-122)||(23594612-23594723)
chr6 (11-125)||(26377803-26377917)
chr6 (16-125)||(14277309-14277417)
[»] chr1 (7 HSPs)
chr1 (11-128)||(19596061-19596178)
chr1 (11-122)||(46336308-46336419)
chr1 (11-121)||(32495817-32495927)
chr1 (18-125)||(43632841-43632948)
chr1 (11-125)||(43997244-43997358)
chr1 (80-123)||(38953658-38953700)
chr1 (80-123)||(30198297-30198339)
[»] chr5 (3 HSPs)
chr5 (11-122)||(9625524-9625635)
chr5 (11-122)||(39305551-39305662)
chr5 (11-90)||(17539992-17540071)
[»] chr4 (3 HSPs)
chr4 (16-122)||(12240563-12240669)
chr4 (11-122)||(49620580-49620691)
chr4 (15-125)||(23666682-23666792)
[»] chr8 (1 HSPs)
chr8 (15-125)||(13083687-13083798)
[»] scaffold1603 (1 HSPs)
scaffold1603 (15-89)||(911-985)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 144 - 312
Target Start/End: Complemental strand, 9216642 - 9216474
Alignment:
Q  144 ataaattcataataagaaagagaaaaagttttcctggaatcttggtcttgttgcaacaatatgagagtgacattcacgatctcacctccacctctctctc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9216642 ataaattcataataagaaagagaaaaagttttcctggaatcttggtcttgttgcaacaatatgagagtgacattcacgatctctcctccacctctctctc 9216543  T
Q  244 ataaactttctctctcataagatactatattttctctttcaaacctcccctatttcggatcaccacacg 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9216542 ataaactttctctctcataagatactatattttctctttcaaacctcccctatttcggatcaccacacg 9216474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 38992816 - 38992699
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38992816 cacagatttcaataatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacaactacagcgtgcaactgcgtgtaaatattac 38992717  T
Q  111 agcagcaaatcctcaccc 128  Q
    ||||| ||||||||||||    
T  38992716 agcaggaaatcctcaccc 38992699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 455 - 528
Target Start/End: Complemental strand, 9216331 - 9216258
Alignment:
Q  455 ggaagattctaccaactgggtcgcttttgtttttgcatatttgtccttttttcgttgatgggtcgttacttttg 528  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9216331 ggaagattctaccaactgggtcgtttttgtttttgcatatttgtccttttttcgttgatgggtcgttacttttg 9216258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 45903424 - 45903307
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45903424 cacagatttcaacaattttacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 45903325  T
Q  111 agcagcaaatcctcaccc 128  Q
    ||||| ||||||||||||    
T  45903324 agcaggaaatcctcaccc 45903307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 41570068 - 41570115
Alignment:
Q  81 ctacagcgtgcaactgcgtgtaaatattacagcagcaaatcctcaccc 128  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41570068 ctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcaccc 41570115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 17229749 - 17229790
Alignment:
Q  81 ctacagcgtgcaactgcgtgtaaatattacagcagcaaatcct 123  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  17229749 ctacagcgtgcaactgcgtgtaaata-tacaacagcaaatcct 17229790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 14792430 - 14792541
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14792430 cacaaatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 14792529  T
Q  111 agcagcaaatcc 122  Q
    ||||||||||||    
T  14792530 agcagcaaatcc 14792541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 4926194 - 4926305
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  4926194 cacaaatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtacaacagctacagcgtacaactgcgtgtaaatattac 4926293  T
Q  111 agcagcaaatcc 122  Q
    ||||| ||||||    
T  4926294 agcaggaaatcc 4926305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 19681042 - 19680936
Alignment:
Q  16 atttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcag 115  Q
    |||| |||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| |    
T  19681042 attttaacaatttcacacaatatcaaatcttaaccattcatttcagatcagacggtgtagaacagctacagcgtataactgcgggtaaatattacagctg 19680943  T
Q  116 caaatcc 122  Q
     ||||||    
T  19680942 gaaatcc 19680936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 41985349 - 41985279
Alignment:
Q  15 gatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctaca 85  Q
    |||||||||||||||| ||||||||| ||||| |||| ||||||||||||| |||||| ||||||||||||    
T  41985349 gatttcaacaatttcatacaatgtcagatcttgaccgctcacttcagatcaaacggtgcagaacagctaca 41985279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 7260348 - 7260418
Alignment:
Q  14 agatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctac 84  Q
    |||||| |||||||||| ||||||||| ||||||||| |||| || |||||||||||| || |||||||||    
T  7260348 agattttaacaatttcatacaatgtcagatcttaaccattcattttagatcagacggtttaaaacagctac 7260418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 23594612 - 23594723
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23594612 cacaaatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 23594711  T
Q  111 agcagcaaatcc 122  Q
    ||||| ||||||    
T  23594712 agcaggaaatcc 23594723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 26377917 - 26377803
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377917 cacaaatttcaacaatttcacacaatgtcagatcttaaccattcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 26377818  T
Q  111 agcagcaaatcctca 125  Q
    ||||| |||||||||    
T  26377817 agcaggaaatcctca 26377803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 14277309 - 14277417
Alignment:
Q  16 atttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcag 115  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| ||||||||    
T  14277309 atttcaacaatttaacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctatagcgtgcaactaagtgtaaata-tacagcag 14277407  T
Q  116 caaatcctca 125  Q
     |||||||||    
T  14277408 gaaatcctca 14277417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 19596061 - 19596178
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19596061 cacagatttcaacaattttacacaatatcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgtaactgcgtgtaaatattac 19596160  T
Q  111 agcagcaaatcctcaccc 128  Q
    ||||| ||||||||||||    
T  19596161 agcaggaaatcctcaccc 19596178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 46336419 - 46336308
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46336419 cacaaatttcaataatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacaactacagcgtgcaactgcgtgtaaatattac 46336320  T
Q  111 agcagcaaatcc 122  Q
    ||||| ||||||    
T  46336319 agcaggaaatcc 46336308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 32495817 - 32495927
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32495817 cacaaatttcaataatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 32495916  T
Q  111 agcagcaaatc 121  Q
    || || |||||    
T  32495917 agtagaaaatc 32495927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 43632948 - 43632841
Alignment:
Q  18 ttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcagca 117  Q
    ||||||||||||||||||||||| |||||||||||||| || | |||||| |||| |||||| |||||||||||||||||||||||   ||||||||| |    
T  43632948 ttcaacaatttcacacaatgtcagatcttaaccgttcattttaaatcagatggtgcagaacaactacagcgtgcaactgcgtgtaatatttacagcagaa 43632849  T
Q  118 aatcctca 125  Q
    ||||||||    
T  43632848 aatcctca 43632841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 43997244 - 43997358
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||||| | |||| ||||||| | |||||||||||||   ||||    
T  43997244 cacatatttcaacaatttcacacaatatcagatcataaccgttcatttcagatcagacggtgcaaaacaactacagcctacaactgcgtgtaatatttac 43997343  T
Q  111 agcagcaaatcctca 125  Q
    ||||| |||||||||    
T  43997344 agcagaaaatcctca 43997358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 38953658 - 38953700
Alignment:
Q  80 gctacagcgtgcaactgcgtgtaaatattacagcagcaaatcct 123  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  38953658 gctacagcgtgcaactgcgtgtaaat-ttacagcagcaaatcct 38953700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 30198297 - 30198339
Alignment:
Q  80 gctacagcgtgcaactgcgtgtaaatattacagcagcaaatcct 123  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  30198297 gctacagcgtgcaactgcgtgtaaat-ttacaccagcaaatcct 30198339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 9625524 - 9625635
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  9625524 cacagatttcaacaatttcacgcaatgtcagatcttaaccgttcacttcagattagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattac 9625623  T
Q  111 agcagcaaatcc 122  Q
    ||||| ||||||    
T  9625624 agcagtaaatcc 9625635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 39305551 - 39305662
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  39305551 cacaaatttcaacaatttcatacaatgtcaaatcttaaccgttcacttcagatcagacggtatagaacagctacggcgtgcaactgcgtgtaaatattac 39305650  T
Q  111 agcagcaaatcc 122  Q
    ||||| ||||||    
T  39305651 agcaggaaatcc 39305662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 17540071 - 17539992
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtg 90  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17540071 cacaaatttcaacaatttcacacaatgtcaaatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtg 17539992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 12240669 - 12240563
Alignment:
Q  16 atttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcag 115  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12240669 atttcaacaatttcacacaatgtcagatcttaatcgttcacttcagatcagacggtgtagaacagctacaacgtgcaactgcgtgtaaatattacagcag 12240570  T
Q  116 caaatcc 122  Q
     ||||||    
T  12240569 gaaatcc 12240563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 49620691 - 49620580
Alignment:
Q  11 cacagatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattac 110  Q
    |||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||    
T  49620691 cacaaatttcaacaatttcacacaatgtcagatcttaacgtttcacttcagatcagacggtgtagaacaactacaacgtacaactgcatgtaaatattac 49620592  T
Q  111 agcagcaaatcc 122  Q
    ||||| ||||||    
T  49620591 agcaggaaatcc 49620580  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 23666682 - 23666792
Alignment:
Q  15 gatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagca 114  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| | |||| |||||| |  ||||||| |||||   ||||||||    
T  23666682 gatttcaacaatttcacacaatgtcagatcttgaccgttcacttcaaatcagacggtgcaaaacaactacagtggacaactgcctgtaatatttacagca 23666781  T
Q  115 gcaaatcctca 125  Q
    | |||||||||    
T  23666782 ggaaatcctca 23666792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 13083687 - 13083798
Alignment:
Q  15 gatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaa-atattacagc 113  Q
    |||||||||||||||||||||||||| |||| | | ||||| |||||||||| ||||| ||||||||||||| |||||||||||||||| || |||||||    
T  13083687 gatttcaacaatttcacacaatgtcagatctgagctgttcagttcagatcaggcggtgcagaacagctacagtgtgcaactgcgtgtaatattttacagc 13083786  T
Q  114 agcaaatcctca 125  Q
    || |||||||||    
T  13083787 agaaaatcctca 13083798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 985 - 911
Alignment:
Q  15 gatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgt 89  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||  ||||||| ||||||||    
T  985 gatttcaacaattttacacaatgtcagatcttgaccgttcacttcagatcagacggtacagaacagttacagcgt 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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