View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16528_low_1 (Length: 1201)
Name: NF16528_low_1
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 681; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 1 - 739
Target Start/End: Original strand, 45211898 - 45212642
Alignment:
| Q |
1 |
gcaacttttgagtaggagtattgtagagtgatatacatattgagctcggctatagattc----ttttaattttatttgagatgatgaatatatttgttaa |
96 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
45211898 |
gcaactcttgagtaggagtattgtagagtgatatacatattgagctcggctatagattcattcttttaattttatttgaggtgatgaatatatttgttaa |
45211997 |
T |
|
| Q |
97 |
ggtgcttccgtggatgtaggcaagaggggccaattcacataaatctctgttttacatcaaagattcatgggtgtgaggctaacttcgatggtgtgtgctg |
196 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
45211998 |
ggtgcttccgtggatgtaggcaagaggtgccaattcacatcaatctctgttttacatcaaagattcatgggtgtgtggctaacttcgatggtgtgtgctg |
45212097 |
T |
|
| Q |
197 |
ctttcgccaacaattctaactgcgtctaagttgtgcataggtacagtttacaagactaagacaatagccgtttgatctaaaagcaaaatcatatcagcag |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45212098 |
ctttcgccaacaattctaactgcgtctaagttgtgcataggtacggtttacaagactaagacaatagccgtttgatctaaaagcaaaatcatatcagcag |
45212197 |
T |
|
| Q |
297 |
gttttttgtgttgaaagtttaagctagcatcttctccaagacgcacagcaaactaaaaagtacatatcacaaacttcatattgaactatattcttttcag |
396 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45212198 |
gttttttgtgtcgaaagtttaagctagcatcttctccaagacgcacagcaaactaaaaagtacatatcacaaacttcatattgaactatattcttttcag |
45212297 |
T |
|
| Q |
397 |
aatcaaaccgatagtaacgttgattgccttaagaaaataaaattaaagtttccgttataattactctttcgcacatacac--aataaattcctcttccat |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45212298 |
aatcaaaccgatagtaacgttgattgccttaagaaaataaaattaaagtttccgttataattactctttcgcacatacacaaaataaattcctcttccag |
45212397 |
T |
|
| Q |
495 |
ttttaaaaacttccagcacatctcatcatgatttgaaatgaagctacctattaccttgattgttcattaattttgtcaaaacggattccttcagaatatg |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45212398 |
ttttaaaaacttccagcacatctcatcatgatttgaaatgaagctaccaattaccttgattgttcattaattttgtcaaaacggattccttcagaatatg |
45212497 |
T |
|
| Q |
595 |
caaatttgtgagcttctgaggagacattaacaattcttccttcagtcttactttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagag |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45212498 |
caaatttgtgagcttctgaggagacattaacaattcttccttcagtcttactttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagag |
45212597 |
T |
|
| Q |
695 |
aaaatgacctgtggaattatattacataaaaacagaatgttcata |
739 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45212598 |
aaaatgacctgtggaattatattacataaaaacagaatgttcata |
45212642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 736 - 1184
Target Start/End: Original strand, 45212674 - 45213122
Alignment:
| Q |
736 |
cataaataaatctaatggccttcgctccctagaaactactgtgacttgtgagtgccaaagttccccaccctcccaattttcatggaaagatcgcaattga |
835 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45212674 |
cataaataaatctaatgaccttcgctccctagaaactactgtgacttgtgagtgccaaagttccccaccctcccaattttcatggaaagatcgcaattga |
45212773 |
T |
|
| Q |
836 |
caaggaattcatgttacaaaaagaacaaaaatagtaaatttgaagtaaagaatgaaacatgtttcacaaatacctaagtggtttgttgcaaactgtagtt |
935 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45212774 |
caaggaattcatgttacaaaaagaacaaaaatagtaaatttgaagtaaagaatgaaacatgtttcacaaatacctaagtggtttgttgcaaactgtagtt |
45212873 |
T |
|
| Q |
936 |
cgatgttgtcattggaaagcatgaaagggcatgccatgactcctgcattgtttcttccaattacaaataaacagatcagaaaacactactaccactggtt |
1035 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
45212874 |
cgatgttgtcattggaaagcatgaaagggcatgccatgactcctgcattgtttcttccaattgcaaataaacagatcagaaaacattactactactggtt |
45212973 |
T |
|
| Q |
1036 |
ttccattaatgatcaagactagaacatagacattcacggtgagacaaagcaagtaattaacaactttaatagaaaccaggaaaaagaaatagtaaatgaa |
1135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45212974 |
ttccattaatgatcaagactagaacatagacattcacggtgagacaaagcaagtaattaacaactttaatagaaaccaggaaaaagaaatagtaaatgaa |
45213073 |
T |
|
| Q |
1136 |
aggcagaactgcatcaggggtcattttctttagttcgtgtcaaatttct |
1184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45213074 |
aggcagaactgcatcaggggtcattttctttagttcgtgtcaaatttct |
45213122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 543 - 706
Target Start/End: Original strand, 45231382 - 45231545
Alignment:
| Q |
543 |
tattaccttgattgttcattaattttgtcaaaacggattccttcagaatatgcaaatttgtgagcttctgaggagacattaacaattcttccttcagtct |
642 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||||||||||||||||| | | |
|
|
| T |
45231382 |
tattaccttgattggtcattaattttgtcaaaacggattccttcaggatatgcaaatatgtaagcttttgcggagacattaacaattcttccttcttttt |
45231481 |
T |
|
| Q |
643 |
tactttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagagaaaatgacctgt |
706 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45231482 |
tactttggtgtgctgttttcttcattgtgtccaacaaaagatttgtcaagagaaaatgacctgt |
45231545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 543 - 705
Target Start/End: Original strand, 45247217 - 45247379
Alignment:
| Q |
543 |
tattaccttgattgttcattaattttgtcaaaacggattccttcagaatatgcaaatttgtgagcttctgaggagacattaacaattcttccttcagtct |
642 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||| ||| |
|
|
| T |
45247217 |
tattaccttgattggtcattaattttgtcaaaacggattccttcagaatatgcaaatgtgtaagcctctccagagacattaacaattcttccttctttct |
45247316 |
T |
|
| Q |
643 |
tactttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagagaaaatgacctg |
705 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45247317 |
tactttggtgtgctgtttttttcattgtgtccaacaaaagatttgtcaagagaaaatgacctg |
45247379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 545 - 705
Target Start/End: Original strand, 45205588 - 45205748
Alignment:
| Q |
545 |
ttaccttgattgttcattaattttgtcaaaacggattccttcagaatatgcaaatttgtgagcttctgaggagacattaacaattcttccttcagtctta |
644 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||||||||| || | ||||| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
45205588 |
ttaccttgattcgtcattgattttatcaaaacggattccttcagaatatgcgaacctatgagcctctgaggcgacattaacaattcttccttctttctta |
45205687 |
T |
|
| Q |
645 |
ctttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagagaaaatgacctg |
705 |
Q |
| |
|
|||| | | ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45205688 |
cttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaagagaaaatgacctg |
45205748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 905 - 1039
Target Start/End: Original strand, 45247835 - 45247969
Alignment:
| Q |
905 |
atacctaagtggtttgttgcaaactgtagttcgatgttgtcattggaaagcatgaaagggcatgccatgactcctgcattgtttcttccaattacaaata |
1004 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||| |
|
|
| T |
45247835 |
atacctaagtggtttgtggcaaactgtagttcaatgttgtctttggacagcatgaaagggcatgacatgattcctgcattgtttcttgcaattacaaata |
45247934 |
T |
|
| Q |
1005 |
aacagatcagaaaacactactaccactggttttcc |
1039 |
Q |
| |
|
|||| | ||||||||| |||||| |||| |||||| |
|
|
| T |
45247935 |
aacaaaccagaaaacattactactactgcttttcc |
45247969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 890 - 1039
Target Start/End: Original strand, 45231624 - 45231773
Alignment:
| Q |
890 |
aaacatgtttcacaaatacctaagtggtttgttgcaaactgtagttcgatgttgtcattggaaagcatgaaagggcatgccatgactcctgcattgtttc |
989 |
Q |
| |
|
|||||| |||| || ||||||| ||||||||| ||||| || ||||| |||||||| ||||| ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
45231624 |
aaacatatttcccacatacctaggtggtttgtagcaaaatgcagttcaatgttgtctttggacagcatgaaagggcataacatgattcctgcattgtttc |
45231723 |
T |
|
| Q |
990 |
ttccaattacaaataaacagatcagaaaacactactaccactggttttcc |
1039 |
Q |
| |
|
|| |||||||||||||||| | ||||||||| |||||| ||| ||||||| |
|
|
| T |
45231724 |
ttgcaattacaaataaacaaaccagaaaacattactactactagttttcc |
45231773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 905 - 1008
Target Start/End: Original strand, 45206167 - 45206270
Alignment:
| Q |
905 |
atacctaagtggtttgttgcaaactgtagttcgatgttgtcattggaaagcatgaaagggcatgccatgactcctgcattgtttcttccaattacaaata |
1004 |
Q |
| |
|
||||||| ||| || || |||||||| ||||| |||||||| ||||| | | |||||||||||||||| ||||||||||| |||||| || || |||| | |
|
|
| T |
45206167 |
atacctatgtgattggtggcaaactgcagttcaatgttgtctttggacaacttgaaagggcatgccataactcctgcattatttcttacagttgcaaaca |
45206266 |
T |
|
| Q |
1005 |
aaca |
1008 |
Q |
| |
|
|||| |
|
|
| T |
45206267 |
aaca |
45206270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 4e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 545 - 707
Target Start/End: Original strand, 19294777 - 19294939
Alignment:
| Q |
545 |
ttaccttgattgttcattaattttgtcaaaacggattccttcagaatatgcaaatttgtgagcttctgaggagacattaacaattcttccttcagtctta |
644 |
Q |
| |
|
||||||||| | ||||||||||| |||||| |||||||||||| ||||| | |||||| | || || |||||| ||| |||||||||||| |||| |
|
|
| T |
19294777 |
ttaccttgactcatcattaattttttcaaaaaggattccttcaggatatgtgtaattgtgaccatcagatgagacaataataattcttccttctttcttg |
19294876 |
T |
|
| Q |
645 |
ctttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagagaaaatgacctgtg |
707 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
19294877 |
ctttcattagctgttttcttcatagtgtctaacaaaaggtttgttaaaagaaaatgacctgtg |
19294939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 545 - 707
Target Start/End: Original strand, 19277346 - 19277508
Alignment:
| Q |
545 |
ttaccttgattgttcattaattttgtcaaaacggattccttcagaatatgcaaatttgtgagcttctgaggagacattaacaattcttccttcagtctta |
644 |
Q |
| |
|
||||||||||| |||||||| || |||||| ||||||||||| ||||| | | |||| | || || |||||||||| |||||||||||| |||| |
|
|
| T |
19277346 |
ttaccttgattcatcattaatgttatcaaaaaggattccttcatcatatgtataaccgtgaccatcagatgagacattaataattcttccttctttcttg |
19277445 |
T |
|
| Q |
645 |
ctttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagagaaaatgacctgtg |
707 |
Q |
| |
|
|||||| | |||||||||||||||||||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
19277446 |
ctttcatttgctgttttcttcatagtgtctaacaaaaggtttgttaaaagaaaatgacctgtg |
19277508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 93
Target Start/End: Original strand, 15679873 - 15679903
Alignment:
| Q |
63 |
taattttatttgagatgatgaatatatttgt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
15679873 |
taattttatttgagatgatgaatatatttgt |
15679903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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