View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_10 (Length: 417)
Name: NF16528_low_10
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 28437846 - 28437451
Alignment:
| Q |
16 |
cctacaactcaacgattcaatactagaagcaagactagtgcaattag---------cactagtactcacattcataaagttcattccttgaattgctgca |
106 |
Q |
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| T |
28437846 |
cctacaactcaatgattcaatactagaagcaagactagtgcaattagtgttattagcactagtactcacattcataaagttcattccttgaattgctgca |
28437747 |
T |
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| Q |
107 |
ttttcatttccaccattaataaatccacctccatttgaagaagagaaaggatataaatttaaaccatttggatcaaggtgaaaacttgaagcacttgtag |
206 |
Q |
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| T |
28437746 |
ttttcatttccaccattaataaatccacctccatttgaagaagagaaaggatataaatttaaaccatttggatcaaggtgaaaacttgaagcacttgtag |
28437647 |
T |
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| Q |
207 |
tagaaacacaggtgtttgaatttgaacttgaaactccaccaatggaagaaaattggttatagtaaaatggttttgaagag------------aaaggtaa |
294 |
Q |
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| T |
28437646 |
tagaaacacaagtg------tttgaacttgaaactccaccaatggaagagaattggttatagtaaaatggttttgaagagaaaggtaaggataaaggtaa |
28437553 |
T |
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| Q |
295 |
gggtaaagaaccaagatgaaaatcaagagaaggtgaagtagagtacttattaatggcttgagatggtgtagatgagtgtttgagtttttgtttctttcta |
394 |
Q |
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| T |
28437552 |
gggtaaagaaccaagatgaaaatcaagagaaggtgaagtagagtacttattaatggcttgagatggtgtagatgagtgtttgagtttttgtttctttcta |
28437453 |
T |
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