View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_11 (Length: 398)
Name: NF16528_low_11
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 4302858 - 4302480
Alignment:
| Q |
1 |
acaccaaatggtgagagtaccctttgtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataat |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302858 |
acaccaaatggtgagagtacccttagtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataat |
4302759 |
T |
|
| Q |
101 |
attgatcaagagtggaggctttgtttatcaagaaactgacataatagcatttcacatagacattacttccatgtttctcatccaccactatttttccatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4302758 |
attgatcaagagtggaggctttgtttatcaagaaactgacataatagcatttcacatagacattacttccatgtttctcatccaccaccatttttccatc |
4302659 |
T |
|
| Q |
201 |
agttgatccattgtcactagctaggactttaatgggcttcacctcaaatttcggcttcataagcaaaaattctatactagcacaagccttcagaagctca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302658 |
agttgatccattgtcactagctaggactttaatgggcttcacctcaaatttcggcttcataagcaaaaattctatactagcacaagccttcagaagctca |
4302559 |
T |
|
| Q |
301 |
ttcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttagatttttcaaaaggattggctagctcat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302558 |
ttcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttagatttttcaaaaggattggctagctcat |
4302480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 31635545 - 31635399
Alignment:
| Q |
1 |
acaccaaatggtgagagtaccctttgtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataat |
100 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31635545 |
acaccaaatggtgagagtacccttggtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataat |
31635446 |
T |
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| Q |
101 |
attgatcaagagtggaggctttgtttatcaagaaactgacataatag |
147 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31635445 |
attgatcaagagtggaggctttgtttatcaagaaactgacataatag |
31635399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 35681656 - 35681518
Alignment:
| Q |
1 |
acaccaaatggtgagagtaccctttgtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataat |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||| || ||||||||||| |
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| T |
35681656 |
acaccaaatggtgagagtacccttagtctaacgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataaaatatgcataat |
35681557 |
T |
|
| Q |
101 |
attgatcaagagtggaggctttgtttatcaagaaactga |
139 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| |
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| T |
35681556 |
attgatcatgagtggaggttttgtttatcaagaaactga |
35681518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 6960722 - 6960686
Alignment:
| Q |
167 |
ttccatgtttctcatccaccactatttttccatcagt |
203 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
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| T |
6960722 |
ttccatatttctcatccaccaccatttttccatcagt |
6960686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 6968117 - 6968081
Alignment:
| Q |
167 |
ttccatgtttctcatccaccactatttttccatcagt |
203 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
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|
| T |
6968117 |
ttccatatttctcatccaccaccatttttccatcagt |
6968081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 37192752 - 37192582
Alignment:
| Q |
5 |
caaatggtgagagtaccctttgta----taatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataat |
100 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
37192752 |
caaatggtgagagtacccttagttagtctaacgtttcttggtcccacttcatataagcctttaataaagcttaaaaatgcattcataagatatgcataat |
37192653 |
T |
|
| Q |
101 |
attgatcaagagtggaggctttgtttatcaagaaactgacataatagcatttcacatagacattacttcca |
171 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||||||||||||| ||| |||| |||||||||||||| |
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| T |
37192652 |
attgatcaagagtagaagctttgtttttcaagaaactgacataataggattgcacagagacattacttcca |
37192582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 254 - 379
Target Start/End: Original strand, 2163340 - 2163465
Alignment:
| Q |
254 |
gcttcataagcaaaaattctatactagcacaagccttcagaagctcattcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttaga |
353 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
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| T |
2163340 |
gcttcataagcaaaaattctctgctagcacaagccttcagaagctccttcttgttaacaccgtatttctttgtggtcaagacacttgcatggcatttcga |
2163439 |
T |
|
| Q |
354 |
tttttcaaaaggattggctagctcat |
379 |
Q |
| |
|
|| |||||||||||||||||||||| |
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| T |
2163440 |
cttgtcaaaaggattggctagctcat |
2163465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 377
Target Start/End: Original strand, 2151063 - 2151185
Alignment:
| Q |
255 |
cttcataagcaaaaattctatactagcacaagccttcagaagctcattcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttagat |
354 |
Q |
| |
|
|||||||||||| || ||| | |||||||||||| | || ||||| |||||||||| ||||||||||||||| |||||||||||| ||| ||||||| |
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| T |
2151063 |
cttcataagcaataactctctgctagcacaagcccttagcagctccttcttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagac |
2151162 |
T |
|
| Q |
355 |
ttttcaaaaggattggctagctc |
377 |
Q |
| |
|
|| ||||| |||| ||| ||||| |
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| T |
2151163 |
ttgtcaaatggatcggccagctc |
2151185 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 49100155 - 49100247
Alignment:
| Q |
167 |
ttccatgtttctcatccaccactatttttccatcagttgatccattgtcactagctaggactttaatgggcttcacctcaaatttcggcttca |
259 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||||||||| || || ||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
49100155 |
ttccatttttctcatccaccaccatttttccgtcagttgattcaatgccactagctaagactttaatgtgcttcacctcaaatttcggcttca |
49100247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 49111971 - 49112063
Alignment:
| Q |
167 |
ttccatgtttctcatccaccactatttttccatcagttgatccattgtcactagctaggactttaatgggcttcacctcaaatttcggcttca |
259 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||| || || ||||||||| ||||||||| |||||||||||||||||||| |||| |
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|
| T |
49111971 |
ttccatgtttctcatctaccactatttttccatcagtggattcaatgccactagctaagactttaataggcttcacctcaaatttcggattca |
49112063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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