View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_12 (Length: 397)
Name: NF16528_low_12
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 43014008 - 43013641
Alignment:
| Q |
19 |
attgtataaattaaaatttcagtcattttcagtaacaatatcaagtactatgatgattttattgggatttgaataatttgtgtcccttttattctactat |
118 |
Q |
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| T |
43014008 |
attgtataaattaaaatttcagtcattttcagtaacaatatcaagtactatgatgattttattgggatttgaataatttgtgtcccttttattctactat |
43013909 |
T |
|
| Q |
119 |
accaggaagaagaggaccatgtccacgtcaacaaggggaaaagcnnnnnnntctctgctttggacaaacctgtcttgctcttcccggaacccacctctat |
218 |
Q |
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| T |
43013908 |
accaggaagaagaggaccatgtccacgtcaacaaggggaaaagcaaaataatctctgctttggacaaacctgtcttgctcttcccggaacccacctctat |
43013809 |
T |
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| Q |
219 |
cttaggtaatatttctgaaatgagcattttgtatcctttttgcaccgtcatctctcatatttt-caaannnnnnnngctaataaatgatgactttcatta |
317 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||| |
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| T |
43013808 |
cttaggtaatatctctgaaatgaccattttgtatcctttttgcacagtcatctctcatattttccaattttcttttgctaataaatgttgactttcatta |
43013709 |
T |
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| Q |
318 |
tatggtaataattagatgtactataattacaactgtttgtatttgttagttattttgtccttacccta |
385 |
Q |
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| T |
43013708 |
tatggtaataattagatgtactataattacaactgtttgtatttgttagttattttgtccttacccta |
43013641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 18222218 - 18222040
Alignment:
| Q |
19 |
attgtataaattaaaatttcagtcattttcagtaacaatatcaagtactatgatgattttattgggatttgaataatttgtgtcccttttattctactat |
118 |
Q |
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| T |
18222218 |
attgtttaaatttaaattttagtcattttcagtaacaatatcaagtactatgatgatttgattgggatttgaataatttgtgtcccttttatt---ctat |
18222122 |
T |
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| Q |
119 |
accaggaagaagaggaccatgtccacgtcaacaaggggaaaagcnnnnnnntctctgctttggacaaacctgtcttgctcttccc |
203 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| |
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| T |
18222121 |
accag---gaagaggaccatgtccacgtcaacaaggggaaaagcaaaaaaatctcttttttggacaaacctgtcctgctcttccc |
18222040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 5076799 - 5076940
Alignment:
| Q |
19 |
attgtataaattaaaatttcagtcatt-ttcagtaacaatatcaagtactatgatgattttattgggatttgaataatttgtgtcccttttattctacta |
117 |
Q |
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||||||||||||||||| | ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
5076799 |
attgtataaattaaaatatgagtcattattcagtaacattatcaagtactatgatgattttattgtgatttgaataatttgtgtcccttttatt---cta |
5076895 |
T |
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| Q |
118 |
taccaggaagaagaggaccatgtccacgtcaacaaggggaaaagc |
162 |
Q |
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| T |
5076896 |
taccaggaagaagaggaccatgtccacgtcaacaagggaaaaagc |
5076940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 18221925 - 18221870
Alignment:
| Q |
294 |
gctaataaatgatgactttcattatatggtaataattagatgtactataattacaa |
349 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
18221925 |
gctaacaaatgatgactttcattatatggtaataattatatgtaatataatcacaa |
18221870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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