View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_13 (Length: 387)
Name: NF16528_low_13
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 24813914 - 24814270
Alignment:
| Q |
14 |
cataggaggaaccatcattatgagcacttaaatgattctcttctaacaaacaaagatcaatctcttctacatttcgttccaccgcgaaccaaatccattc |
113 |
Q |
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| T |
24813914 |
cataggaggaaccatcattatgagcacttaaatgattctcttctaacaaacaaagatcaatctcttctacatttcgttccaccgcgaaccgaatccattc |
24814013 |
T |
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| Q |
114 |
atcgagatcattgcaaccgtaccctttactgcgaaatgtgaaacaaacttttaatttgtcgattttttgcacatttttaacatgtgacaaatatttgttc |
213 |
Q |
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| T |
24814014 |
atcgagatcattgcaaccgtatcctttactgcgaaatgtgaaacaaacttttaatttgtcgattttttgcacatttttaacatgtgacaaatatttgttc |
24814113 |
T |
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| Q |
214 |
acattacttacaaaggtagaggctctcttcattttgatattaaacattaacactttgcttaggttatatatattgggaaatgagtaatctttcactagca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24814114 |
acattacttacaaaggtagaggctctcttcattttgatattaaacattaacactttgcttaggttatatatattgggaaatgagtaatctttcactagca |
24814213 |
T |
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| Q |
314 |
tgttttctgcatcaaaaataagattggttggatttgtataaatgtatctccaattgg |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24814214 |
tgttttctgcatcaaaaataagattggttggatttgtataaatgtatctccaattgg |
24814270 |
T |
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