View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_14 (Length: 373)
Name: NF16528_low_14
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 52001748 - 52002003
Alignment:
| Q |
3 |
ttcatgttccacatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactga |
102 |
Q |
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| T |
52001748 |
ttcatgttccacatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactga |
52001847 |
T |
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| Q |
103 |
cttctaataaatgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaa |
202 |
Q |
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| T |
52001848 |
cttctaataaatgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaa |
52001947 |
T |
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| Q |
203 |
aagccaaaggtatttgattttctggtatttccttcctctgatgatgatcatcaatg |
258 |
Q |
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| T |
52001948 |
aagccaaaggtagttgattttctggtatttccttcctctgatgatgatcatcaatg |
52002003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 52002002 - 52002064
Alignment:
| Q |
290 |
tgagtggtttctttccttttggatcggaagtgttttcaaagttgtagagttttgtgcgtttag |
352 |
Q |
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| T |
52002002 |
tgagtggtttctttccttttggatcagaagtgttttcaaagttgtagagttttgtgcgtttag |
52002064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 52011785 - 52011878
Alignment:
| Q |
151 |
tcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtatttgattttctggtatttccttcctctgat |
244 |
Q |
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| T |
52011785 |
tcgctatcattagtttcagtttcattggtaatgatatagtcattaatatccaaatccagtgatatttgattttctgttatttccttcctctgat |
52011878 |
T |
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