View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_15 (Length: 355)
Name: NF16528_low_15
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 52001547 - 52001207
Alignment:
| Q |
1 |
tggacttgcttcgcttgatggtgtttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001547 |
tggacttgcttcgcttgatggtgtttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaacta |
52001448 |
T |
|
| Q |
101 |
cttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001447 |
cttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatat |
52001348 |
T |
|
| Q |
201 |
tagaggtatgtttattgaatttaattgtttcacatatataatacttagtgtttcttgtagttttgctgcaattccacatttttatttcctatttgaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001347 |
tagaggtatgtttattgaatttaattgtttcacatatataatacttagtgtttcttgtagttttgctgcaattccacatttttatttcctatttgaattt |
52001248 |
T |
|
| Q |
301 |
tgtcattcaaatttgggtcgtgtgaagttacaaatcacagg |
341 |
Q |
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| T |
52001247 |
tgtcattcaaatttgggtcgtgtgaagttacaaatcacagg |
52001207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 6 - 333
Target Start/End: Original strand, 51988091 - 51988419
Alignment:
| Q |
6 |
ttgcttcgcttgatggtgtttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttct |
105 |
Q |
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| T |
51988091 |
ttgcttcgcttgatagtgtttctgaagagctaaagcaaaggcttagcacgttgttatgtgatctgggcaaaatgaatggtcactttcttgaactacttct |
51988190 |
T |
|
| Q |
106 |
aagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagag |
205 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
51988191 |
tagtgggttttcaaatgtgattcggcttaaagattgcttctggttgacagaggaagaatttataaaatattttggaacattggacacttccatattagag |
51988290 |
T |
|
| Q |
206 |
gtatgtttattgaatttaattgtttcacatatataatacttagtgtttcttgtagttttgctgcaattccacatttttatttcc-tatttgaattttgtc |
304 |
Q |
| |
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||||||| ||| |||||||||||| || |||| ||||| || ||||| || ||||| | ||||||||| ||||| ||||| |||| ||||||| | |
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| T |
51988291 |
gtatgttcattcaatttaattgttcagcagatattgtacttggtttttctagtgattttgttacaattccacctttttctttccaaatttcaattttgac |
51988390 |
T |
|
| Q |
305 |
attcaaatttgggtcgtgtgaagttacaa |
333 |
Q |
| |
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||| ||||||||| ||||||||| |||| |
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| T |
51988391 |
atttgaatttgggttgtgtgaagtcacaa |
51988419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 52011403 - 52011202
Alignment:
| Q |
10 |
ttcgcttgatggtgtttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttctaagt |
109 |
Q |
| |
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|||||||||||||||||| |||| || ||||||||||||||||||||| | |||||||| |||||||||||| || || ||||||||||||||| ||| |
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| T |
52011403 |
ttcgcttgatggtgtttcggatgagctcaaacaaaggcttagcgcgttggtatgtgattcgagaaaaatgaattgtcgctttcttgaactacttctgagt |
52011304 |
T |
|
| Q |
110 |
ggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagaggtat |
209 |
Q |
| |
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|| ||||| | | |||||||||||||||||||| ||| |||||||||||||||| || |||| |||||||| |||||||| ||||||||||||||||| |
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| T |
52011303 |
gggtttcctactcatattcggcttaaagattgctcctggttgacagaggaagaattcactaaatgttttggaatgttggacacttccatattagaggtat |
52011204 |
T |
|
| Q |
210 |
gt |
211 |
Q |
| |
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|| |
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|
| T |
52011203 |
gt |
52011202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 11749184 - 11749011
Alignment:
| Q |
38 |
aaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttctaagtggatttccaaatgtgattcggcttaaag |
137 |
Q |
| |
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|||||||||||| | ||||||||||| |||||| ||||||||||||||| || ||||||| ||||||||||||| | ||| | | || ||||||||| |
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| T |
11749184 |
aaacaaaggctttgtgcgttgctttgcgattcaggaaaaatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaag |
11749085 |
T |
|
| Q |
138 |
attgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagaggtatgt |
211 |
Q |
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| T |
11749084 |
actgctcctggttgacataggaagaattcactgcatattttggagtgttggacacttccacggtagaggtatgt |
11749011 |
T |
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