View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16528_low_17 (Length: 300)

Name: NF16528_low_17
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16528_low_17
NF16528_low_17
[»] chr7 (9 HSPs)
chr7 (92-300)||(4303011-4303219)
chr7 (92-214)||(11001101-11001223)
chr7 (104-189)||(1369529-1369614)
chr7 (92-192)||(8915448-8915547)
chr7 (92-212)||(1217487-1217605)
chr7 (95-158)||(1786420-1786483)
chr7 (92-214)||(13883010-13883133)
chr7 (95-192)||(11228432-11228528)
chr7 (98-211)||(27142353-27142462)
[»] chr2 (11 HSPs)
chr2 (92-300)||(31635889-31636097)
chr2 (92-296)||(35681816-35682016)
chr2 (97-188)||(280294-280385)
chr2 (92-161)||(27952652-27952721)
chr2 (92-214)||(33053109-33053230)
chr2 (94-154)||(2165624-2165684)
chr2 (93-214)||(32162243-32162363)
chr2 (92-191)||(22011095-22011194)
chr2 (93-150)||(23457389-23457446)
chr2 (116-192)||(18945663-18945739)
chr2 (92-192)||(36648585-36648685)
[»] chr1 (8 HSPs)
chr1 (95-192)||(10926906-10927003)
chr1 (100-214)||(13441924-13442036)
chr1 (92-214)||(23988913-23989035)
chr1 (95-160)||(8966030-8966095)
chr1 (92-192)||(10927814-10927914)
chr1 (95-190)||(40805571-40805666)
chr1 (107-192)||(31915247-31915332)
chr1 (92-160)||(31522576-31522644)
[»] chr8 (7 HSPs)
chr8 (92-189)||(23573249-23573346)
chr8 (92-220)||(2688855-2688981)
chr8 (147-299)||(37192910-37193063)
chr8 (92-154)||(22922177-22922239)
chr8 (94-165)||(22512377-22512448)
chr8 (92-150)||(26377776-26377834)
chr8 (98-192)||(24577811-24577905)
[»] chr6 (14 HSPs)
chr6 (92-213)||(18203126-18203246)
chr6 (92-215)||(22873499-22873622)
chr6 (92-192)||(34374062-34374162)
chr6 (92-192)||(22888965-22889065)
chr6 (92-212)||(12881715-12881834)
chr6 (92-192)||(22910508-22910608)
chr6 (92-154)||(3541947-3542009)
chr6 (92-154)||(30049617-30049679)
chr6 (92-154)||(30051904-30051966)
chr6 (92-192)||(12778684-12778782)
chr6 (103-153)||(18720019-18720069)
chr6 (92-152)||(32361109-32361169)
chr6 (100-155)||(8047663-8047718)
chr6 (94-122)||(11194398-11194426)
[»] chr5 (3 HSPs)
chr5 (100-214)||(21845225-21845335)
chr5 (92-213)||(18252109-18252230)
chr5 (99-154)||(19677629-19677684)
[»] chr4 (7 HSPs)
chr4 (100-192)||(22716324-22716416)
chr4 (100-192)||(22988801-22988893)
chr4 (92-188)||(6659656-6659751)
chr4 (92-192)||(10494634-10494734)
chr4 (94-192)||(7635000-7635098)
chr4 (92-154)||(13085421-13085483)
chr4 (100-170)||(9260297-9260367)
[»] scaffold0054 (3 HSPs)
scaffold0054 (94-214)||(49002-49122)
scaffold0054 (92-192)||(10361-10461)
scaffold0054 (94-214)||(37404-37523)
[»] chr3 (5 HSPs)
chr3 (93-214)||(365879-365999)
chr3 (92-214)||(8536658-8536780)
chr3 (92-142)||(3064066-3064116)
chr3 (108-190)||(2473000-2473084)
chr3 (95-140)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (92-154)||(45943-46005)
[»] scaffold0024 (2 HSPs)
scaffold0024 (92-192)||(145444-145544)
scaffold0024 (92-192)||(144179-144282)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 92 - 300
Target Start/End: Complemental strand, 4303219 - 4303011
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303219 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 4303120  T
Q  192 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303119 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 4303020  T
Q  292 attctatat 300  Q
    |||||||||    
T  4303019 attctatat 4303011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 11001101 - 11001223
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||  |||||||||||||| ||||    
T  11001101 ccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctccaatgaaaaaga 11001200  T
Q  192 gcacacccacccggatcccattg 214  Q
    |  || || || |||||||||||    
T  11001201 gatcatcctcctggatcccattg 11001223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 1369614 - 1369529
Alignment:
Q  104 agtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaa 189  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  1369614 agtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 8915448 - 8915547
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||||||||||||||||||| |||||||||||| || ||||| |||||||| | ||||| ||| |||||||||||| ||||||||| ||||||||||    
T  8915448 ccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagc-tcccatgcatgttgactcctccgatgaacaaga 8915546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 1217487 - 1217605
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||| ||  |||||||||||  ||||||||| |||||||    
T  1217487 ccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaagagatt-tcatgcatgtcgtgtcctccaattaacaaga 1217584  T
Q  192 gcacacccacccggatcccat 212  Q
    |  ||||| || |||||||||    
T  1217585 gaccaccctcctggatcccat 1217605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 1786483 - 1786420
Alignment:
Q  95 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagct 158  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  1786483 tcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaagagct 1786420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 13883010 - 13883133
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgc--atgtcgactcctccaatgaacaa 189  Q
    ||||||| |||||||||| ||||||||| |||||||||| |||||||||||||| | |||||||| ||| |||||  |||| | |||||||||| |||||    
T  13883010 ccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatgttggctcctccaataaacaa 13883108  T
Q  190 gagcacacccacccggatcccattg 214  Q
    |||  ||||| || |||||||||||    
T  13883109 gagaccaccctcctggatcccattg 13883133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 11228528 - 11228432
Alignment:
Q  95 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    |||||||||||||| |||| ||||| ||||||| |  |||||||||||||| | ||||||| |||||||||||||  |||||||  ||||||||||||    
T  11228528 tcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgatgactcctataatgaacaagag 11228432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 27142462 - 27142353
Alignment:
Q  98 tacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaa-gagcttcccatgcatgtcgactcctccaatgaacaagagcaca 196  Q
    ||||||||||||||| ||    |||||| |||| ||| |||||| ||| ||||||| |||||||| |||||||| | ||| |||||||||||  || |||    
T  27142462 tacatcagtctcctctac----gaagaaatcgaccccaagttcttattatgataaaagagcttcc-atgcatgttggctcttccaatgaacagaagaaca 27142368  T
Q  197 cccacccggatccca 211  Q
    |||||||| ||||||    
T  27142367 cccacccgaatccca 27142353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 92 - 300
Target Start/End: Complemental strand, 31636097 - 31635889
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  31636097 ccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactcctccaatgaacaaga 31635998  T
Q  192 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 291  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||    
T  31635997 gcacacccacccggatcccattggttgaactctgaaggtccgtttttatggacagagcagccactgtgcaatgtaccaacaatagcagactcacttgata 31635898  T
Q  292 attctatat 300  Q
    |||||||||    
T  31635897 attctatat 31635889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 296
Target Start/End: Complemental strand, 35682016 - 35681816
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||| | |||||||| ||||||| ||||||||||||    
T  35682016 ccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgttgactccttcaatgaacaaga 35681917  T
Q  192 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 291  Q
    |     ||||| |||||||||||||||||  ||||  |||| |||||||||||| ||| | ||||| |||| ||||||||||||||||| ||||||||||    
T  35681916 g----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcaaggtaccaacaatagcagactcacttgata 35681821  T
Q  292 attct 296  Q
    |||||    
T  35681820 attct 35681816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 280294 - 280385
Alignment:
Q  97 ctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaaca 188  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||    
T  280294 ctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaaca 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 27952652 - 27952721
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcc 161  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  27952652 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 33053230 - 33053109
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||| ||| | |||||||||||| ||| |||||||||||||| ||| |||||||    
T  33053230 cccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctctaataaacaaga 33053132  T
Q  192 gcacacccacccggatcccattg 214  Q
    |  ||||| || | |||||||||    
T  33053131 gaccaccctcctgaatcccattg 33053109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 2165684 - 2165624
Alignment:
Q  94 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 154  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  2165684 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 2165624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 32162243 - 32162363
Alignment:
Q  93 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    |||| ||||| ||||||||||| ||||||| ||||| | |  ||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||    
T  32162243 cctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgact-ctctaatgaacaagag 32162341  T
Q  193 cacacccacccggatcccattg 214  Q
      ||||| ||  ||||||||||    
T  32162342 accaccctccttgatcccattg 32162363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 22011194 - 22011095
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||| ||||| |||||||||||||| |||||||||| || ||||||||||| | |||||||  ||| |||| |||| ||||||| | ||||||||||    
T  22011194 ccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaagaatttctcatgtatgttgactccttcgatgaacaaga 22011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 23457446 - 23457389
Alignment:
Q  93 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat 150  Q
    ||||||||||||||| ||||||||||||||||||||   |||||||||||||| ||||    
T  23457446 cctcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 18945739 - 18945663
Alignment:
Q  116 ctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    ||||||| ||||||||||||| |||||||| |||| ||||| ||| ||| |||||  |||||| |||||||||||||    
T  18945739 ctctgaaaaactcgatcccgaattctcattctgattaagagtttctcattcatgttaactcctgcaatgaacaagag 18945663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 36648685 - 36648585
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaag 190  Q
    ||||||||||| ||||||||||| || ||||||||||||  || ||||||  || |||| |||| |||| |||||||||  ||||| ||||||||| |||    
T  36648685 ccctcctacatgagtctcctccatctatgaagaactcgactcccagttcttgttctgataaaagtgctt-ccatgcatgatgactcttccaatgaataag 36648587  T
Q  191 ag 192  Q
    ||    
T  36648586 ag 36648585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 10927003 - 10926906
Alignment:
Q  95 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||    
T  10927003 tcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgttgactcctccaatgaataagag 10926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 13441924 - 13442036
Alignment:
Q  100 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagagcacaccc 199  Q
    |||||||||||||||||||||||||| ||||||   |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||  || ||    
T  13441924 catcagtctcctccacctctgaagaattcgatca--agttctcattctgataaagagcttcccatgcatgttgactcctccaatgagcaagagatcatcc 13442021  T
Q  200 acccggatcccattg 214  Q
     || |||||||||||    
T  13442022 tcctggatcccattg 13442036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 23989035 - 23988913
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||||||| |||||||| |||||||||||||||||| |  |||||||| ||||| ||||||||||||| |||||||  |||||| |||||| |||||    
T  23989035 ccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgttaactccttcaatgagcaaga 23988936  T
Q  192 gcacacccacccggatcccattg 214  Q
    |  |||||  | |||||||||||    
T  23988935 gatcacccttctggatcccattg 23988913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 8966030 - 8966095
Alignment:
Q  95 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttc 160  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  8966030 tcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagcttc 8966095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 10927914 - 10927814
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||||||||| | |||||||| ||| |||||| || ||||| | |||| |||||||    
T  10927914 ccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgcaagttgactcttacaataaacaaga 10927815  T
Q  192 g 192  Q
    |    
T  10927814 g 10927814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 40805666 - 40805571
Alignment:
Q  95 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaag 190  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||||||  || |||||| ||| ||| ||||||||  ||||||||| |||||||||    
T  40805666 tcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgactcctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 31915332 - 31915247
Alignment:
Q  107 ctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaacaagag 192  Q
    |||||||||||||||||||||| | ||||||||||| || | || ||||| || |||| || ||| |||||||||||||||||||||    
T  31915332 ctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttgactcctccaatgaacaagag 31915247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 31522644 - 31522576
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttc 160  Q
    |||||||||||||| | | ||||||||||||||||||||   ||||||||| || |||||| |||||||    
T  31522644 ccctcctacatcagccccttccacctctgaagaactcgacttcgagttctcgttctgataatgagcttc 31522576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 23573346 - 23573249
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaa 189  Q
    |||| |||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23573346 cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgttgactcctccaatgaacaa 23573249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 2688981 - 2688855
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| | ||  |||| ||||||||||||| ||||||||||||||||| ||    
T  2688981 ccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaat--agagtttcccatgcatgttgactcctccaatgaacatga 2688884  T
Q  192 gcacacccacccggatcccattggttgaa 220  Q
    |  ||||| |  |||||||||||| ||||    
T  2688883 gatcaccctcatggatcccattgggtgaa 2688855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 147 - 299
Target Start/End: Complemental strand, 37193063 - 37192910
Alignment:
Q  147 tgataaagagcttcccatgcatgtcgactcctccaatgaa-caagagcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggaca 245  Q
    |||| |||||||  |||||||||| |||||||||||  || |||||| ||| || || |||||||||||  |||||||||| ||||| ||||||||||||    
T  37193063 tgatgaagagctctccatgcatgttgactcctccaaaaaaacaagagaacatcctcctggatcccattgagtgaactgtgagggtccctttttatggaca 37192964  T
Q  246 gagctgtcactgtgcaatgtaccaacaatagcagaatcacttgataattctata 299  Q
     ||| | ||||| |||||||||||||||| |||||  |||||||||||||||||    
T  37192963 aagcagccactgagcaatgtaccaacaattgcagacgcacttgataattctata 37192910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 22922177 - 22922239
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 154  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  22922177 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttcataaag 22922239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 22512377 - 22512448
Alignment:
Q  94 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatg 165  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||| ||| ||||||  |||||||||||    
T  22512377 ctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagcttcccatg 22512448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 26377834 - 26377776
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat 150  Q
    |||||||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||    
T  26377834 ccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 24577811 - 24577905
Alignment:
Q  98 tacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    |||||||||||||||||| ||||||||| |||| |  |||||||| || ||||| ||| |||| | ||||| |  ||||||||||| ||||||||    
T  24577811 tacatcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagag 24577905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 18203246 - 18203126
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||| |||||||| |||||||||||    
T  18203246 ccctcctacatcagtctcctccacctctgaagaactcga-cccgagttctcattttaataaagagttttccatgcatgttgactcctcgaatgaacaaga 18203148  T
Q  192 gcacacccacccggatcccatt 213  Q
    |  ||||| ||  |||||||||    
T  18203147 gaccaccctcctagatcccatt 18203126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 22873622 - 22873499
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    |||||||||||||||||| ||||||||| | ||| |||||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  22873622 ccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaaga 22873523  T
Q  192 gcacacccacccggatcccattgg 215  Q
    |   |||| || ||||||||||||    
T  22873522 gacaaccctcctggatcccattgg 22873499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 34374062 - 34374162
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||| ||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  34374062 ccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaacaaga 34374161  T
Q  192 g 192  Q
    |    
T  34374162 g 34374162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 22889065 - 22888965
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  22889065 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaaga 22888966  T
Q  192 g 192  Q
    |    
T  22888965 g 22888965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 12881834 - 12881715
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||| |||||||  ||| |||| |||||||||||||| |||| || ||||||||||||    
T  12881834 ccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttgacttcttcaatgaacaaga 12881736  T
Q  192 gcacacccacccggatcccat 212  Q
    |  ||||| || |||||||||    
T  12881735 gaccaccctcctggatcccat 12881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 22910608 - 22910508
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||    
T  22910608 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactcctccaatgaacaaga 22910509  T
Q  192 g 192  Q
    |    
T  22910508 g 22910508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 3542009 - 3541947
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 154  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  3542009 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 3541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 30049679 - 30049617
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 154  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30049679 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30049617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 30051966 - 30051904
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 154  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30051966 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30051904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 12778684 - 12778782
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||| |||||||||||||||||||||||||||||| || ||| | |||||||| ||||  |||| ||||  ||||||| ||||||||||||||||||||    
T  12778684 ccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgat--agagtttcctttgcatgttgactcctccaatgaacaaga 12778781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 18720069 - 18720019
Alignment:
Q  103 cagtctcctccacctctgaagaactcgatcccgagttctcattttgataaa 153  Q
    ||||||||||||||| |||||||||||| ||||| |||| |||||||||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattctaattttgataaa 18720019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 32361169 - 32361109
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataa 152  Q
    ||||||||||| ||||| |||||||||| || ||||||| | |||||||||||| ||||||    
T  32361169 ccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 8047663 - 8047718
Alignment:
Q  100 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaaga 155  Q
    |||| ||||||||||||||||||||||| || |||||||||| ||| | |||||||    
T  8047663 catcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaaga 8047718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 11194426 - 11194398
Alignment:
Q  94 ctcctacatcagtctcctccacctctgaa 122  Q
    |||||||||||||||||||||||||||||    
T  11194426 ctcctacatcagtctcctccacctctgaa 11194398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 21845225 - 21845335
Alignment:
Q  100 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagagcacaccc 199  Q
    |||||||||  |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    | ||    
T  21845225 catcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgttgactcctccaatgaacaaga----aacc 21845320  T
Q  200 acccggatcccattg 214  Q
    |||||||||||||||    
T  21845321 acccggatcccattg 21845335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 18252230 - 18252109
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||||| |||||| |||||| |||||||||||||| || |||||||||||||| ||||||| ||||| |||||||||| ||||||||||||| ||||||    
T  18252230 ccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctccaatggacaaga 18252131  T
Q  192 gcacacccacccggatcccatt 213  Q
    |  ||||| || | ||||||||    
T  18252130 gaccaccctcctgaatcccatt 18252109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 19677629 - 19677684
Alignment:
Q  99 acatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 154  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  19677629 acatcagtctcctccacctctgaagaactcgaccccgagttctcatctttataaag 19677684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 22716416 - 22716324
Alignment:
Q  100 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  22716416 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagag 22716324  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 22988801 - 22988893
Alignment:
Q  100 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  22988801 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagag 22988893  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 6659656 - 6659751
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaaca 188  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||||||| || | ||||||||||| |||||    
T  6659656 ccctcctacatcagtctcctctacctctgaagaactcga-cccaaattctcatcttgataaagagcttcccatgaatattgactcctccaaagaaca 6659751  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 10494734 - 10494634
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    ||||| ||||||||||| ||| || |||||||||||||| | | |||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  10494734 ccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaacaaga 10494635  T
Q  192 g 192  Q
    |    
T  10494634 g 10494634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 7635098 - 7635000
Alignment:
Q  94 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    |||| |||||||||||||||| ||||||||||||||| ||| | |||||||| | ||||| |||| ||||||||||| ||||||||| |||||||||||    
T  7635098 ctcccacatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagag 7635000  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 13085421 - 13085483
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 154  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||    
T  13085421 ccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctcatcttgataaag 13085483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 9260367 - 9260297
Alignment:
Q  100 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgt 170  Q
    ||||| ||||||| || ||| |||||||||| |||||||||| ||||||||||||| |||| |||| ||||    
T  9260367 catcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataaagaacttctcatggatgt 9260297  T

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Target: scaffold0054 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 49122 - 49002
Alignment:
Q  94 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||| ||||| ||| |||||||||| ||||| ||| ||||||| |||    
T  49122 ctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaactt-ccatgcatgttgactcttcctatgaacacgag 49024  T
Q  193 cacacccacccggatcccattg 214  Q
     |||||||||||||||||||||    
T  49023 aacacccacccggatcccattg 49002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 10461 - 10361
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||    
T  10461 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactcctccaatgaacaaga 10362  T
Q  192 g 192  Q
    |    
T  10361 g 10361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 37523 - 37404
Alignment:
Q  94 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |||| ||| |||| ||||||||| |||||||||| ||||| ||| ||||||  |||    
T  37523 ctcctacatcagtctcctccacctctgaagaactcga-cccaaattcttattctgataaaagagctt-ccatgcatgttgactcttcctatgaaccggag 37426  T
Q  193 cacacccacccggatcccattg 214  Q
     || |||| |||||||||||||    
T  37425 aacgcccaaccggatcccattg 37404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 365879 - 365999
Alignment:
Q  93 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 192  Q
    |||||| ||||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||| |||| ||||| ||||||||||| |||    
T  365879 cctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagctt-ccatgtatgttgactcttccaatgaacaggag 365977  T
Q  193 cacacccacccggatcccattg 214  Q
      ||||| || |||||||||||    
T  365978 accaccctccgggatcccattg 365999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 8536658 - 8536780
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 191  Q
    |||||||||||||| ||| ||||||||| ||||||||||  ||||||||| ||| ||||||| || ||| |||  |||| ||||| ||||||||||||||    
T  8536658 ccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaacaaga 8536757  T
Q  192 gcacacccacccggatcccattg 214  Q
    |  ||||| || |||||||||||    
T  8536758 gatcaccctcctggatcccattg 8536780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 3064066 - 3064116
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctc 142  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  3064066 ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 3064116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 2473000 - 2473084
Alignment:
Q  108 tcctccacctctgaagaactcgatcccgagttctcattttgat--aaagagcttcccatgcatgtcgactcctccaatgaacaag 190  Q
    |||||||| | | |||||||||| |||||||||||||| ||||  ||| | |||| ||||||||| |||| ||||||||||||||    
T  2473000 tcctccacttttaaagaactcgaccccgagttctcattctgataaaaaaaacttctcatgcatgttgacttctccaatgaacaag 2473084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 24516698 - 24516743
Alignment:
Q  95 tcctacatcagtctcctccacctctgaagaactcgatcccgagttc 140  Q
    |||||||||| |||||||||| || ||||||||||| |||||||||    
T  24516698 tcctacatcaatctcctccacttcagaagaactcgaccccgagttc 24516743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 45943 - 46005
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 154  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  45943 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 46005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 145544 - 145444
Alignment:
Q  92 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaacaag 190  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||| | ||| |||||||||| |  || | || ||| ||||||| |||||||||||    
T  145544 ccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactccttcaatgaacaag 145446  T
Q  191 ag 192  Q
    ||    
T  145445 ag 145444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 144179 - 144282
Alignment:
Q  92 ccctcctacatcagt---ctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaac 187  Q
    ||||||| |||||||   |||||||| |||||||||||| || |||||||||| ||| |||||||||| |  |||| || ||||||||||| | ||||||    
T  144179 ccctcctgcatcagtctcctcctccatctctgaagaacttga-cccgagttcttattctgataaagagttgtccattcattgtcgactccttcgatgaac 144277  T
Q  188 aagag 192  Q
    |||||    
T  144278 aagag 144282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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