View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_20 (Length: 273)
Name: NF16528_low_20
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_20 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 19207100 - 19207369
Alignment:
| Q |
1 |
taaagttgatgaagatctgcgaagcttgtcagctgacataattgctagagttagttttgggagcaattatgtcgaaggaaaagaaatattcacaaagctt |
100 |
Q |
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| T |
19207100 |
taaagttgatgaagatctgcgaagcttgtcagctgacataattgctagagttagttttgggagcaattatgtcgaaggaaaagaaatattcacaaagctt |
19207199 |
T |
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| Q |
101 |
agagatcttataaaactcctctccaagatatatgttggaattccgggctttaggtatgcatgatcattgaaagactttcgtaccgatgaatc-------- |
192 |
Q |
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| T |
19207200 |
agagatcttataaaactcctctccaagatatatgttggaattccgggctttaggtatgcatgatcattgaaagactttcgtaccgataaatcgtgagcaa |
19207299 |
T |
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| Q |
193 |
---agtgtactgtttttccattttaatatatttcttgttcttgttaatgatgatactaatgtggaaaatg |
259 |
Q |
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| T |
19207300 |
tatagtgtactgtttttccattttaatatatttcttgttcttgttaatgatgatactaatgtggaaaatg |
19207369 |
T |
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Target: scaffold0147 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 9431 - 9593
Alignment:
| Q |
6 |
ttgatgaagatctgcgaagcttgtcagctgacataattgctagagttagttttgggagcaattatgtcgaaggaaaagaaatattcacaaagcttagaga |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
9431 |
ttgacgaagatctgcgaagcttgtcagctgacataattgctagagtttgttttgggagcaattatgtcaaaggaaaagaaatattcacaaagcttaggga |
9530 |
T |
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| Q |
106 |
tcttataaaactcctctccaagatatatgttggaattccgggctttaggtatgcatgatcatt |
168 |
Q |
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| T |
9531 |
tcttctaaaactcctctccaagatatatgttggaattcctggttttaggtattcatgatcatt |
9593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 25196664 - 25196832
Alignment:
| Q |
4 |
agttgatgaagatctgcgaagcttgtcagctgacataattgctagagttagttttgggagcaattatgtcgaaggaaaagaaatattcacaaagcttaga |
103 |
Q |
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| T |
25196664 |
agttgatgaagatttgcgaagcttgtcggctgacataattgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttaga |
25196763 |
T |
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| Q |
104 |
gatcttataaaactcctctccaagatatatgttggaattccgggctttaggtatgcatgatcattgaaa |
172 |
Q |
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| T |
25196764 |
gatcttataaaactcctctccaagataaatcttggaattccaggctataggtatgcatgattattgaaa |
25196832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 1762115 - 1762244
Alignment:
| Q |
29 |
tcagctgacataattgctagagttagttttgggagcaattatgtcgaaggaaaagaaatattcacaaagcttagagatcttataaaactcctctccaaga |
128 |
Q |
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|||| |||||||||||| |||| | ||||||||||||||||||| ||||||| |||||| || ||||||||||||| ||| ||| || | | ||| | |
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| T |
1762115 |
tcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttcaaagcttagagaacttcaaaacatcatttgcaaaa |
1762214 |
T |
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| Q |
129 |
tatatgttggaattccgggctttaggtatg |
158 |
Q |
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| T |
1762215 |
tttttgctggaattccaggctttaggtatg |
1762244 |
T |
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