View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_24 (Length: 240)
Name: NF16528_low_24
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37960586 - 37960815
Alignment:
| Q |
1 |
tggtaatgacaattcaccgctatcacgacaatctgcaagaaacacaaagtagcagtgatcatcaagatcaacacaatcaccttcatcacttttgctatca |
100 |
Q |
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| T |
37960586 |
tggtaatgacaattcaccgctatcacgacaatctgcaagaaacacaaagtagcagtgatcatcaagatcaacacaatcaccttcatcacttttgctatca |
37960685 |
T |
|
| Q |
101 |
ccctcctctgcttttatcatacaaaaccaaatcaaggaacttgttacaacaaaagttgacaagtgttgtattctacaactctctttacatttatcagtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37960686 |
ccctcctctgcttttatcatacaaaaccaaatcaaggaacttgttacaacaaaagttgacaagtgttgtattctacaactctctttacatttatcagtaa |
37960785 |
T |
|
| Q |
201 |
cccatttctttaacttctggacttgttcat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37960786 |
cccatttctttaacttctggacttgttcat |
37960815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 37915525 - 37915477
Alignment:
| Q |
118 |
catacaaaaccaaatcaaggaacttgttacaacaaaagttgacaagtgt |
166 |
Q |
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| T |
37915525 |
catacaaaaccaaatcaaggaacatgttacaacaaaagttgacatgtgt |
37915477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 37907369 - 37907314
Alignment:
| Q |
106 |
ctctgcttttatcatacaaaaccaaatcaaggaacttgttacaacaaaagttgaca |
161 |
Q |
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| T |
37907369 |
ctctgattttaccatacaaaaccaaatcaaggaacatgttacaacaaatgttgaca |
37907314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 3783652 - 3783596
Alignment:
| Q |
106 |
ctctgcttttatcatacaaaaccaaatcaaggaacttgttacaacaaaagttgacaa |
162 |
Q |
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||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3783652 |
ctctgattttatcaaacaaaaccaaatcaaggaacatgttacaacaaaagttgacaa |
3783596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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