View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_4 (Length: 607)
Name: NF16528_low_4
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 23 - 607
Target Start/End: Complemental strand, 42893851 - 42893260
Alignment:
| Q |
23 |
aaaagcatgattgaggccacaagatcagcaacacagctttgatgtgccgtgcaaagggccaattatccttgaagaaacacgtacgacgaaatatcccatt |
122 |
Q |
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| T |
42893851 |
aaaagcatgattgaggccacaagatcagcaacacagctttgatgtgccgtgcaaagggccaattatccttgaagaaacacgtacgacgaaatatctcatt |
42893752 |
T |
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| Q |
123 |
caatttcacctacaaatccatgttatgcgtttattcaattcagtaagggaatttggtcacnnnnnnnnnnn-------tcagcaagggaacagactccct |
215 |
Q |
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| T |
42893751 |
caatttcacctacaaatccatgttatgcgtttattcaattcagtaagggaatttggtcacaaaaaaaaaaaaaaaaaatcagcaagggaacagactccct |
42893652 |
T |
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| Q |
216 |
catagcatacagtgatggaatattagaatttcaaacaaagcatgtgcaaattaccccctaatgtaatgaaaaggcgtagtagccgttctagcaaagtgtg |
315 |
Q |
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| T |
42893651 |
catagcatacagtgatggaatattagaatttcaaacaaagcatgtgcaaattaccccctaatgtaatgaaaaggcgtagtggccgttctagcaaagtgtg |
42893552 |
T |
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| Q |
316 |
tcgtgtaaaacggatatgtagcatacgagagaagaatataacataaacatagcttggtgcttaacnnnnnnnnnnnnnngcttggtctaaattaatcaaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42893551 |
tcgtgtaaaacggatatgtagcatacgagagaagaatataacataaacatagcttggtgcttaacaaaaactaaaaaaagcttggtctaaattaatcaaa |
42893452 |
T |
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| Q |
416 |
agaatattagccaatccttatcaacattcaaaaagtcatccacacttaccttatgactattagaaaatagaaatcaatagcaacatgtaaattataagtt |
515 |
Q |
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| T |
42893451 |
agaatattagccaatccttatcaacattcaaaaagtcatccacacttaccttatgactattagaaaatagaaatcaatagcaacatgtaaattataagtt |
42893352 |
T |
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| Q |
516 |
ggtagaaattattacagaaaagcactcaacataaactggctagtttctttttgtataggcatgaaattatttgctattcaccatcaaacatc |
607 |
Q |
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| T |
42893351 |
ggtagaaattattacagaaaagcactcaacacaaactggctagtttctttttgtataggcatgaaattatttgctattcaccatcaaacatc |
42893260 |
T |
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