View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_5 (Length: 569)
Name: NF16528_low_5
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 10 - 556
Target Start/End: Original strand, 8152140 - 8152683
Alignment:
| Q |
10 |
atcatcattattttagcaaaagttatactttaagatttcaataaaattacgacgttcgtgattagatcaaattcactgtcatttcaaacatattctaata |
109 |
Q |
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| T |
8152140 |
atcatcattattttagcaaaagttatactttaagacttcaataaaattacgacgttcgtgattagatcaaattcactgtcatttcaaacatattctaata |
8152239 |
T |
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| Q |
110 |
acattggaagtctttaacacatatttggtcaataaaagaaattggaggggatcaactataaatagttgagtagaaaatgagtgaaannnnnnnnnaaggg |
209 |
Q |
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| T |
8152240 |
acattggaagtctttaacacatatttggtcaataaaagaaattggaggggatcaactataaacacgtgagtagaaaatgagcgaattttttttt--aggg |
8152337 |
T |
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| Q |
210 |
aaaaatgaaagaaaattttattacttcgtataagaggggcgataaaagtaggcaattcatcataatgtgagcctttcgatgtggtttgggtttaacaaga |
309 |
Q |
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| T |
8152338 |
aaaaatgaaagaaaattttattacttcatatgagaggggcgataaaagtaaacaactcatcataatgtgggcctt-cgatgtggtttgggtttaacaaga |
8152436 |
T |
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| Q |
310 |
aaactaagtagtccgacttataagaaatcaaaggattttacgtttttcctaacttagctctgctagggttagtttcccttcaccaacgatgttgagttaa |
409 |
Q |
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| T |
8152437 |
aaactaagtagtccgacttataagaaatcaaaggattttacgtttttcctaacttagctctgctagggttagttccccttcaccaacgatgttgagttaa |
8152536 |
T |
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| Q |
410 |
cttcggccgggggttcttccttctgcaagaggggaatgctcttgctttatttagcagcctcatctcctcattttcttcaaccatggatgttccacaattt |
509 |
Q |
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| T |
8152537 |
cttcgggcgggggttcttccttctgcaagaggggaatgctcttgctttatttagcagcctcatctcctcattttcttcaaccatggatgttccacaattt |
8152636 |
T |
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| Q |
510 |
aatcctttcaatggtaccacccacacatcctcagtcttgacgaccac |
556 |
Q |
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| T |
8152637 |
aatcctttcaatggtaccacccacacatcctcagtcttgacgaccac |
8152683 |
T |
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