View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16528_low_7 (Length: 527)

Name: NF16528_low_7
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16528_low_7
NF16528_low_7
[»] chr8 (5 HSPs)
chr8 (81-480)||(41958227-41958623)
chr8 (354-513)||(40841569-40841726)
chr8 (310-423)||(44436080-44436192)
chr8 (26-76)||(44436383-44436433)
chr8 (340-397)||(22816489-22816546)
[»] chr5 (12 HSPs)
chr5 (175-423)||(38000862-38001110)
chr5 (26-182)||(38001211-38001366)
chr5 (184-297)||(40691020-40691133)
chr5 (36-113)||(6309094-6309169)
chr5 (354-409)||(27026652-27026707)
chr5 (340-397)||(6308666-6308723)
chr5 (36-113)||(6309058-6309133)
chr5 (322-375)||(30909807-30909860)
chr5 (185-250)||(30909953-30910018)
chr5 (24-91)||(30910117-30910184)
chr5 (64-113)||(6309130-6309178)
chr5 (322-375)||(40687609-40687662)
[»] chr1 (8 HSPs)
chr1 (188-416)||(26317201-26317430)
chr1 (322-397)||(36386841-36386914)
chr1 (174-250)||(338270-338346)
chr1 (184-297)||(8421712-8421825)
chr1 (341-423)||(8421591-8421672)
chr1 (132-178)||(43407609-43407655)
chr1 (187-262)||(43407771-43407846)
chr1 (322-423)||(338077-338177)
[»] chr7 (12 HSPs)
chr7 (354-513)||(9993219-9993377)
chr7 (433-513)||(29587502-29587582)
chr7 (310-423)||(12196686-12196799)
chr7 (322-423)||(12911836-12911936)
chr7 (184-297)||(49170250-49170363)
chr7 (40-91)||(12196497-12196548)
chr7 (132-178)||(10289033-10289079)
chr7 (322-423)||(49170409-49170509)
chr7 (187-262)||(10289195-10289270)
chr7 (26-91)||(12911516-12911581)
chr7 (39-91)||(21491286-21491338)
chr7 (39-91)||(22077992-22078044)
[»] chr2 (15 HSPs)
chr2 (184-392)||(40729373-40729582)
chr2 (184-257)||(18292692-18292765)
chr2 (322-423)||(18292851-18292951)
chr2 (26-91)||(18292517-18292582)
chr2 (194-262)||(36732152-36732220)
chr2 (175-262)||(41340664-41340750)
chr2 (174-421)||(29270654-29270907)
chr2 (132-179)||(41340512-41340559)
chr2 (186-250)||(40447643-40447706)
chr2 (184-231)||(12774864-12774911)
chr2 (322-376)||(36732449-36732503)
chr2 (184-233)||(28267606-28267655)
chr2 (304-373)||(36732370-36732437)
chr2 (322-423)||(40447450-40447550)
chr2 (39-98)||(12774192-12774252)
[»] chr4 (7 HSPs)
chr4 (306-423)||(40458923-40459038)
chr4 (322-422)||(55162155-55162254)
chr4 (186-297)||(40459069-40459179)
chr4 (340-423)||(69267-69350)
chr4 (36-113)||(69690-69765)
chr4 (184-229)||(55162368-55162413)
chr4 (39-91)||(49499418-49499470)
[»] chr3 (11 HSPs)
chr3 (323-422)||(43278369-43278468)
chr3 (312-409)||(8730832-8730930)
chr3 (312-409)||(9082719-9082817)
chr3 (175-262)||(43278240-43278326)
chr3 (132-178)||(7336936-7336982)
chr3 (187-262)||(7337098-7337173)
chr3 (354-397)||(9104217-9104260)
chr3 (64-113)||(17542452-17542500)
chr3 (340-397)||(17542815-17542872)
chr3 (39-91)||(5004557-5004609)
chr3 (39-91)||(16975636-16975688)
[»] scaffold0041 (1 HSPs)
scaffold0041 (184-255)||(33278-33349)
[»] chr6 (3 HSPs)
chr6 (39-126)||(24163251-24163335)
chr6 (357-423)||(24158893-24158959)
chr6 (39-91)||(32450055-32450107)
[»] scaffold0013 (1 HSPs)
scaffold0013 (354-423)||(243188-243257)
[»] scaffold0413 (1 HSPs)
scaffold0413 (39-91)||(9185-9237)


Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 81 - 480
Target Start/End: Original strand, 41958227 - 41958623
Alignment:
Q  81 cactaaggcaaccacaaagaaaataatagtaacacattatcatgca--tgacaaaacaatgattagtcacacatatactacaatttagacttctattaat 178  Q
    ||||||||||||||||||||||||||||   |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958227 cactaaggcaaccacaaagaaaataata---acacattatcatgcacatgacaaaacaatgattagtcacacatatactacaatttagacttctattaat 41958323  T
Q  179 ttatcaaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcacactctcattcataaata 278  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41958324 ttatcaaaaaatctaacatctcttttccaacatcacaaaaacatataaagcataatagcataaaatatattatttcacatcacactctcattcataaata 41958423  T
Q  279 tcatctagaacataattaaataactattttcagaaaagattagattttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtca 378  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||    
T  41958424 tcatctagaacataattaaataactactttaaaaaaagattagattttaccctaaaactacattttaattatctgcctttttaaaagacaagaattgcca 41958523  T
Q  379 ccactatttaataacacagctctagcacttaatatggatgtatggcnnnnnnnncccttaccttatacccttttctcccctttcaactcagtgcttttag 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| |||||||||||||||||||||| |||||||||||    
T  41958524 ccactatttaataacacagctctagcacttaatatggatgtatgg--gaaaaagcccttaccttagacccttttctcccctttcaacttagtgcttttag 41958621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 354 - 513
Target Start/End: Original strand, 40841569 - 40841726
Alignment:
Q  354 tctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtatggcnnnnnnnncccttaccttatacccttttc 453  Q
    |||||| |||||||||||||||  ||||||||||||||||||||  ||| |||||| || | | ||||||         ||||||| ||| |||||||||    
T  40841569 tcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaagaacgtatgg--gaaaaagcccttacattagacccttttc 40841666  T
Q  454 tcccctttcaactcagtgcttttagagaatctccaaacgcacgatcaaacacttcatgtt 513  Q
    ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  40841667 tcccctttcaacttagtgtttttagagaatctccaaacgcacgaacaaacacttcatgtt 40841726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 423
Target Start/End: Complemental strand, 44436192 - 44436080
Alignment:
Q  310 agaaaagattagattttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcactta 409  Q
    ||||||||||| |||||||  | ||| |||||||||||||| | ||||||||||||||||||||||  ||||||||||||||||||| |  |||||||||    
T  44436192 agaaaagatta-attttactttaaaaatacattttaattatttttctttttaaaagacaagaattgctaccactatttaataacacatccttagcactta 44436094  T
Q  410 atatggatgtatgg 423  Q
     ||| || ||||||    
T  44436093 gtattgacgtatgg 44436080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 44436433 - 44436383
Alignment:
Q  26 aatatagttataacccgccacttaagcaccacacggatatataatattaac 76  Q
    |||||| ||||||||||| ||| |  |||||||||||||||||||||||||    
T  44436433 aatataattataacccgcaactaagacaccacacggatatataatattaac 44436383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 22816489 - 22816546
Alignment:
Q  340 attttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacag 397  Q
    ||||||||| | | |||||| || ||||||||||||  ||||||||||||||||||||    
T  22816489 attttaattgtttttcttttcaagagacaagaattgcaaccactatttaataacacag 22816546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 175 - 423
Target Start/End: Complemental strand, 38001110 - 38000862
Alignment:
Q  175 taatttatcaaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcacactctcattcata 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38001110 taatttatcaaaaaatctaacatctcttttccaacatcacaaaaacatataaagcataatagcataaaatatatcatttcacatcacactctcattcata 38001011  T
Q  275 aatatcatctagaacataattaaataactattttcagaaaagattagattttaccctgaaactacattttaattatctgtctttttaaaagacaagaatt 374  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38001010 aatatcatctagaacatgattaaataactactttcagaaaagattagactttaccctgaaactatattttaattatctgtctttttaaaagacaagaatt 38000911  T
Q  375 gtcaccactatttaataacacagctctagcacttaatatggatgtatgg 423  Q
    |  |||| ||||||||||||||||||||||||||| |||||| ||||||    
T  38000910 gctaccattatttaataacacagctctagcacttagtatggacgtatgg 38000862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 38001366 - 38001211
Alignment:
Q  26 aatatagttataacccgccacttaagcaccacacggatatataatattaacccgccactaaggcaaccacaaagaaaataatagtaacacattatcatg- 124  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||     
T  38001366 aatataattataactcgccactaaagcaccacacggatatataatattaacccgccactaaggcaaccacaaagaaaataa---taacacattatcatgc 38001270  T
Q  125 -catgacaaaacaatgattagtcacacatatactacaatttagacttctattaatttat 182  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38001269 acatgacaaaacaatgattagtcacacatatactacaatttagacttctattaatttat 38001211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 297
Target Start/End: Complemental strand, 40691133 - 40691020
Alignment:
Q  184 aaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcacactctcattcataaatatcatc 283  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||||  | |   ||||||||||||| |||||| |||| | |||| || || | |||||    
T  40691133 aaaaaatgtaacatttcttttccaacatcacaaaaacatataaagcgcattgatataaaatatatcaattcacaccacattatcatacacaactttcatc 40691034  T
Q  284 tagaacataattaa 297  Q
    || |||||||||||    
T  40691033 taaaacataattaa 40691020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 6309169 - 6309094
Alignment:
Q  36 taacccgccacttaagcaccacacggatatataatattaacccgccactaaggcaaccacaaagaaaataatagtaac 113  Q
    |||||||||||| | ||||||||| || |||||||| ||||||||||||||||| |||||| |||| |||||||||||    
T  6309169 taacccgccactaaggcaccacacaga-atataatagtaacccgccactaaggc-accacacagaatataatagtaac 6309094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 27026707 - 27026652
Alignment:
Q  354 tctttttaaaagacaagaattgtcaccactatttaataacacagctctagcactta 409  Q
    |||||| |||||||||||||||| |||||||||||||||||||   ||||||||||    
T  27026707 tcttttcaaaagacaagaattgttaccactatttaataacacaatcctagcactta 27026652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 6308723 - 6308666
Alignment:
Q  340 attttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacag 397  Q
    ||||||||||| | |||||| || ||||||||||||  ||||||||||||||||||||    
T  6308723 attttaattatttttcttttcaagagacaagaattgctaccactatttaataacacag 6308666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 6309133 - 6309058
Alignment:
Q  36 taacccgccacttaagcaccacacggatatataatattaacccgccactaaggcaaccacaaagaaaataatagtaac 113  Q
    |||||||||||| | ||||||||| || |||||||| ||||||||||||||| | |||||| |||| |||||||||||    
T  6309133 taacccgccactaaggcaccacacaga-atataatagtaacccgccactaagac-accacacagaatataatagtaac 6309058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 30909860 - 30909807
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattg 375  Q
    |||||||| ||||| ||| |||||||||| | ||||||||||||||||||||||    
T  30909860 attttaccatgaaattacgttttaattatttttctttttaaaagacaagaattg 30909807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 30910018 - 30909953
Alignment:
Q  185 aaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatca 250  Q
    |||||| ||||||  |||||||||| | | |||||||||||||||||||||  |||||||||||||    
T  30910018 aaaaatgtaacattacttttccaacataaaaaaaacatataaagcataataatataaaatatatca 30909953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 30910184 - 30910117
Alignment:
Q  24 ataatatagttataacccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    |||||||| ||||||||||||||||| |||||||   || |||| ||||||||  |||||||||||||    
T  30910184 ataatataattataacccgccacttaggcaccactaagaaatatgatattaacttgccactaaggcaa 30910117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 6309178 - 6309130
Alignment:
Q  64 atataatattaacccgccactaaggcaaccacaaagaaaataatagtaac 113  Q
    |||| ||||||||||||||||||||| |||||| |||| |||||||||||    
T  6309178 atatgatattaacccgccactaaggc-accacacagaatataatagtaac 6309130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 40687662 - 40687609
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattg 375  Q
    |||||| | ||||| ||| |||||||||| | ||||||||||||||||||||||    
T  40687662 attttatcatgaaaatacgttttaattatttttctttttaaaagacaagaattg 40687609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 188 - 416
Target Start/End: Complemental strand, 26317430 - 26317201
Alignment:
Q  188 aatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcacactctcattcataaatatcatctaga 287  Q
    |||||||||| ||||| ||||| ||||||| | ||||||| ||||||  ||||||||||||||||  |||||||| | |||| || ||||||||| ||      
T  26317430 aatctaacatttctttcccaacatcacaaagatatataaaacataatcacataaaatatatcattctacatcacattttcatacacaaatatcatataat 26317331  T
Q  288 acataattaa--ataactattttcagaaaagattagattttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactat 385  Q
    ||| ||||||  ||||| | ||| ||||||||||| ||||||| || ||| |||||||||| ||| | |||| |||||||||||||||||  ||||||||    
T  26317330 acaaaattaagaataaccacttttagaaaagattaaattttactctcaaa-tacattttaactatttttcttcttaaaagacaagaattgctaccactat 26317232  T
Q  386 ttaataacacagctctagcacttaatatgga 416  Q
    |||||| |||||| |||||||||| ||||||    
T  26317231 ttaataccacagccctagcacttattatgga 26317201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 36386841 - 36386914
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacag 397  Q
    |||||||| ||||| |||  ||||||||| | ||||||||||||||||||||||  ||||||||||||||||||||    
T  36386841 attttaccatgaaaatac--tttaattatttttctttttaaaagacaagaattgctaccactatttaataacacag 36386914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 338346 - 338270
Alignment:
Q  174 ttaatttatcaa-aaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatca 250  Q
    |||||| ||||| ||||| |||||| |||||||||||| ||||||| ||||||||||||||||  |||||||||||||    
T  338346 ttaattcatcaagaaaatgtaacatttcttttccaacgccacaaaa-catataaagcataataatataaaatatatca 338270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 297
Target Start/End: Complemental strand, 8421825 - 8421712
Alignment:
Q  184 aaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcacactctcattcataaatatcatc 283  Q
    ||||||| |||||| ||||||||||| |||||| ||||||||||||  | ||  ||||||||||||| |||||| |||| | |||| || || | ||||     
T  8421825 aaaaaatgtaacatttcttttccaacatcacaagaacatataaagcgcattaatataaaatatatcaattcacaccacattatcatacacaactttcata 8421726  T
Q  284 tagaacataattaa 297  Q
    || |||||||||||    
T  8421725 taaaacataattaa 8421712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 423
Target Start/End: Complemental strand, 8421672 - 8421591
Alignment:
Q  341 ttttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtatgg 423  Q
    |||||||||| | ||||||||||||||||||||||  ||  ||| ||||||||||||| |||||||||| |||| | ||||||    
T  8421672 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagc-ctagcacttagtatgtacgtatgg 8421591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 43407609 - 43407655
Alignment:
Q  132 aaacaatgattagtcacacatatactacaatttagacttctattaat 178  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||    
T  43407609 aaacaatgattagccacacatatacttaaatttagacttctattaat 43407655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 43407771 - 43407846
Alignment:
Q  187 aaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcaca 262  Q
    ||||||||||||||||| || || |||||| ||||||| ||||||||||  |||||| | | || |||||||||||    
T  43407771 aaatctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacaaaccagttcacatcaca 43407846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 423
Target Start/End: Complemental strand, 338177 - 338077
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtat 421  Q
    |||||||  ||||| ||| |||||| ||| | |||||||| ||||||||||||   ||| ||| ||||||||| || ||||||||||| |||||| ||||    
T  338177 attttactatgaaaatacgttttaactatttttctttttagaagacaagaattactacctctacttaataacatag-tctagcacttagtatggacgtat 338079  T
Q  422 gg 423  Q
    ||    
T  338078 gg 338077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 354 - 513
Target Start/End: Complemental strand, 9993377 - 9993219
Alignment:
Q  354 tctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtatggcnnnnnnnncccttaccttatacccttttc 453  Q
    |||||| |||||||||||||||| ||| ||||||||||||| ||| |||||||||| || | | || |||         ||||||||||| |||||||||    
T  9993377 tcttttcaaaagacaagaattgttacccctatttaataacaaagccctagcacttagtaagaacgtgtgg-ggaaaaagcccttaccttagacccttttc 9993279  T
Q  454 tcccctttcaactcagtgcttttagagaatctccaaacgcacgatcaaacacttcatgtt 513  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  9993278 tcccctttcaacttagtgcttttagagaatctccaaatgcacgaacaaacacttcatgtt 9993219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 433 - 513
Target Start/End: Complemental strand, 29587582 - 29587502
Alignment:
Q  433 cccttaccttatacccttttctcccctttcaactcagtgcttttagagaatctccaaacgcacgatcaaacacttcatgtt 513  Q
    ||||||||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||    
T  29587582 cccttaccttagacgcttttctcccctttcaacttagtgcttttagagaatcttcaaacgcacgaactaacacttcatgtt 29587502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 423
Target Start/End: Original strand, 12196686 - 12196799
Alignment:
Q  310 agaaaagattagattttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcactta 409  Q
    |||||||||||  ||| ||| | ||| |||||||||||||| | ||||||||||||||||||||||  ||||||||||||||||| ||  || |||||||    
T  12196686 agaaaagattaattttcaccgtaaaaatacattttaattatttttctttttaaaagacaagaattgctaccactatttaataacatagtccttgcactta 12196785  T
Q  410 atatggatgtatgg 423  Q
     || | ||||||||    
T  12196786 gtaagaatgtatgg 12196799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 423
Target Start/End: Original strand, 12911836 - 12911936
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtat 421  Q
    |||||||| ||||| |||||||||||||| | |||||||||||||||| |||||  |||  || ||||||||||| | |||||||||| |||||| ||||    
T  12911836 attttaccatgaaaatacattttaattatttttctttttaaaagacaaaaattgctacctttacttaataacacaac-ctagcacttagtatggacgtat 12911934  T
Q  422 gg 423  Q
    ||    
T  12911935 gg 12911936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 297
Target Start/End: Original strand, 49170250 - 49170363
Alignment:
Q  184 aaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcacactctcattcataaatatcatc 283  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||||  | ||  ||||||||||||| |||||| || | | |||| || || | ||||     
T  49170250 aaaaaatgtaacatttcttttccaacatcacaaaaacatataaagcgcattaatataaaatatatcaattcacaccatattatcatacacaactttcata 49170349  T
Q  284 tagaacataattaa 297  Q
    || |||||||||||    
T  49170350 taaaacataattaa 49170363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 12196497 - 12196548
Alignment:
Q  40 ccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    |||||||| | ||||||||| |||||||||||||||||| ||||||||||||    
T  12196497 ccgccactaaggcaccacacagatatataatattaacccaccactaaggcaa 12196548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 10289033 - 10289079
Alignment:
Q  132 aaacaatgattagtcacacatatactacaatttagacttctattaat 178  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||    
T  10289033 aaacaatgattagccacacatatacttaaatttagacttctattaat 10289079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 423
Target Start/End: Original strand, 49170409 - 49170509
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtat 421  Q
    |||||||| ||||| ||  |||||||||| | ||||||||||||||||||||||  ||  ||| |||||||||||||  || |||||| |||||| ||||    
T  49170409 attttaccatgaaaataggttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagc-gtaacacttagtatggacgtat 49170507  T
Q  422 gg 423  Q
    ||    
T  49170508 gg 49170509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 10289195 - 10289270
Alignment:
Q  187 aaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcaca 262  Q
    ||||||||||||||||| || || |||||| ||||||| ||||||||||  |||||| | | || |||||||||||    
T  10289195 aaatctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacaaaccagttcacatcaca 10289270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 12911516 - 12911581
Alignment:
Q  26 aatatagttataacccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    |||||| ||||||||||||||||| |||||||   || |||| ||||||||| | |||||||||||    
T  12911516 aatataattataacccgccacttaggcaccactaagaaatatgatattaacctgtcactaaggcaa 12911581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 21491286 - 21491338
Alignment:
Q  39 cccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    ||||||||| | ||||||||| || ||||| ||||||||| ||||||||||||    
T  21491286 cccgccactaaggcaccacacagaaatatattattaacccaccactaaggcaa 21491338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 22078044 - 22077992
Alignment:
Q  39 cccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    ||||||||| | ||||||||  || ||||| ||||||||||||||||||||||    
T  22078044 cccgccactaaggcaccacaaagagatatattattaacccgccactaaggcaa 22077992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 184 - 392
Target Start/End: Original strand, 40729373 - 40729582
Alignment:
Q  184 aaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcacactctcattcataaatatcatc 283  Q
    ||||||| || ||| ||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||| |||| | |||| || || |  |||     
T  40729373 aaaaaatatagcatttcttttccaacatcacaaaaacatataaagcataataatataaaatatatcaattcacaccacattatcatacacaatttccata 40729472  T
Q  284 tagaacataatta--aataactattttcagaaaagattagattttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcacca 381  Q
    || ||||||||||  |||||  | ||| ||||| ||||| |||||||| ||||| ||| ||||||| || | ||||||||||||||||||||||  |||     
T  40729473 taaaacataattaagaataaacacttttagaaaggatta-attttaccatgaaaatacgttttaatcatttttctttttaaaagacaagaattgctacct 40729571  T
Q  382 ctatttaataa 392  Q
    ||| |||||||    
T  40729572 ctacttaataa 40729582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 18292692 - 18292765
Alignment:
Q  184 aaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcaca 257  Q
    ||||||| |||||| ||||||||||| ||||||||| |||||||||||||||  ||||||||||||| ||||||    
T  18292692 aaaaaatgtaacatttcttttccaacatcacaaaaatatataaagcataataatataaaatatatcaattcaca 18292765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 322 - 423
Target Start/End: Original strand, 18292851 - 18292951
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtat 421  Q
    |||||||| | ||| |||||||||| ||| | ||||||||||||||||||||||  ||| ||| ||||||||||||| |||||||||| |||||| ||||    
T  18292851 attttaccataaaaatacattttaactatttttctttttaaaagacaagaattgctacctctacttaataacacagc-ctagcacttagtatggacgtat 18292949  T
Q  422 gg 423  Q
    ||    
T  18292950 gg 18292951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 18292517 - 18292582
Alignment:
Q  26 aatatagttataacccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    |||||| ||||||||||||||| | ||||| ||| |||||||||||||||||| ||||||||||||    
T  18292517 aatataattataacccgccactaaggcaccccacagatatataatattaacccaccactaaggcaa 18292582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 36732152 - 36732220
Alignment:
Q  194 acatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcaca 262  Q
    |||| ||||||||| | |||||||||||||||||||||||||  ||||||||||||| |||||| ||||    
T  36732152 acatttcttttccagcatcacaaaaacatataaagcataataatataaaatatatcaattcacaccaca 36732220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 41340664 - 41340750
Alignment:
Q  175 taatttatcaaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcaca 262  Q
    ||||||||||||| ||||||||||||||| || || |||||| ||||||| ||||||||||  |||||| ||| || |||||||||||    
T  41340664 taatttatcaaaa-atctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacataccagttcacatcaca 41340750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 421
Target Start/End: Complemental strand, 29270907 - 29270654
Alignment:
Q  174 ttaatttatcaaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcat-----aaaatatatcatttcacatcacactctca 268  Q
    ||||||||||||||| | ||||||  |||||||||| || ||||| |||| ||| ||||||| ||      |||| |||  ||| ||||||||| |||||    
T  29270907 ttaatttatcaaaaa-tgtaacataacttttccaacatcgcaaaagcatacaaatcataataacaacaaaaaaaaaatacaattccacatcacattctca 29270809  T
Q  269 ttcataaatatcatctagaacataattaaa-taactattttcagaaaagattagattttaccctgaaactacat--tttaattatctgtctttttaaaag 365  Q
    | || ||||||||  || || ||||||||| |||  ||||| | |||| |||| |||||||  || ||||||||  ||||||| | | |||||| |||||    
T  29270808 tacacaaatatcaaata-aatataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgtttttcttttcaaaag 29270710  T
Q  366 acaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtat 421  Q
    ||||||||||  |||||||||||||| |||| | ||| |||||| |||||| ||||    
T  29270709 acaagaattgctaccactatttaatagcacaaccctaacacttagtatggacgtat 29270654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 41340512 - 41340559
Alignment:
Q  132 aaacaatgattagtcacacatatactacaatttagacttctattaatt 179  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  41340512 aaacaatgattagccacacatatacttaaatttagacttctattaatt 41340559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 40447706 - 40447643
Alignment:
Q  186 aaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatca 250  Q
    ||||| ||||||  ||||||||||| ||||||| ||||||||||||||||  |||||||||||||    
T  40447706 aaaatgtaacattacttttccaacgccacaaaa-catataaagcataataatataaaatatatca 40447643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 12774864 - 12774911
Alignment:
Q  184 aaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcat 231  Q
    |||||||||||||| ||||||| ||| ||||||||||| |||||||||    
T  12774864 aaaaaatctaacatttcttttctaacatcacaaaaacaaataaagcat 12774911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 36732449 - 36732503
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgt 376  Q
    |||||||| ||||| ||  |||||||||| | |||||||||||||||||||||||    
T  36732449 attttaccatgaaaatatgttttaattatttttctttttaaaagacaagaattgt 36732503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 28267606 - 28267655
Alignment:
Q  184 aaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataa 233  Q
    |||||||||||||| ||||| | ||| ||||||||||| |||||||||||    
T  28267606 aaaaaatctaacatttctttcctaacatcacaaaaacaaataaagcataa 28267655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 36732370 - 36732437
Alignment:
Q  304 attttcagaaaagattagattttaccctgaaactacattttaattatctgtctttttaaaagacaagaat 373  Q
    ||||| ||||| ||||| |||||||| ||||| ||| |||||||||| | ||||||||||||||||||||    
T  36732370 atttttagaaaggatta-attttaccatgaaaatacgttttaattattt-tctttttaaaagacaagaat 36732437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 423
Target Start/End: Complemental strand, 40447550 - 40447450
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtat 421  Q
    |||||||  ||||| ||| |||||| ||| | |||||||| ||||||||||||   ||| ||| ||||||||| || ||||||||||| |||||| ||||    
T  40447550 attttactatgaaaatacgttttaactatttttctttttagaagacaagaattactacctctacttaataacatag-tctagcacttagtatggacgtat 40447452  T
Q  422 gg 423  Q
    ||    
T  40447451 gg 40447450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 12774192 - 12774252
Alignment:
Q  39 cccgccacttaagcaccacacggatatataatattaacccgccactaaggca-accacaaa 98  Q
    ||||||||||| ||||||||  || |||| |||||| ||||||||||||||| ||||||||    
T  12774192 cccgccacttaggcaccacaaagagatatgatattatcccgccactaaggcacaccacaaa 12774252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 306 - 423
Target Start/End: Complemental strand, 40459038 - 40458923
Alignment:
Q  306 tttcagaaaagattagattttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagca 405  Q
    ||||||||| ||||| |||||||| ||||| ||| |||||||||| | ||||||||||||||||||||||  ||| ||| |||||||||||| |||||||    
T  40459038 tttcagaaaggatta-attttaccatgaaaatacgttttaattatttttctttttaaaagacaagaattgctacctctacttaataacacag-tctagca 40458941  T
Q  406 cttaatatggatgtatgg 423  Q
    |||| |||||| ||||||    
T  40458940 cttagtatggacgtatgg 40458923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 422
Target Start/End: Complemental strand, 55162254 - 55162155
Alignment:
Q  322 attttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtat 421  Q
    |||||||| ||||| ||| |||||||||| | ||||||||||||||||||||||  ||  ||| |||||||||||| ||||||||||| |||||| ||||    
T  55162254 attttaccatgaaaatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-tctagcacttagtatggacgtat 55162156  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 40459179 - 40459069
Alignment:
Q  186 aaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcacactctcattcataaatatcatcta 285  Q
    ||||| |||||| ||||||||||| |||||||| ||||||||||||||||  ||||||||||||| |||||| |||| | |||| || || | |||| ||    
T  40459179 aaaatgtaacatttcttttccaacatcacaaaa-catataaagcataataatataaaatatatcaattcacaccacattatcatacacaactttcatata 40459081  T
Q  286 gaacataattaa 297  Q
     |||||||||||    
T  40459080 aaacataattaa 40459069  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 423
Target Start/End: Complemental strand, 69350 - 69267
Alignment:
Q  340 attttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtatgg 423  Q
    ||||||||| | | |||||| || ||||||||||||  ||||||||||||||||||||  ||| |||||| |||||| ||||||    
T  69350 attttaattgtttttcttttcaagagacaagaattgctaccactatttaataacacagtcctaacacttagtatggacgtatgg 69267  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 69765 - 69690
Alignment:
Q  36 taacccgccacttaagcaccacacggatatataatattaacccgccactaaggcaaccacaaagaaaataatagtaac 113  Q
    |||||||||||| | ||||||||| || |||||||  ||||||||||||||||| |||||| |||| |||||||||||    
T  69765 taacccgccactaaggcaccacacaga-atataatcgtaacccgccactaaggc-accacacagaatataatagtaac 69690  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 55162413 - 55162368
Alignment:
Q  184 aaaaaatctaacatctcttttccaacgtcacaaaaacatataaagc 229  Q
    ||||||| |||||| ||||||||||| |||||||||||||||||||    
T  55162413 aaaaaatgtaacatttcttttccaacatcacaaaaacatataaagc 55162368  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 49499470 - 49499418
Alignment:
Q  39 cccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    ||||||||| | ||||||||| || ||||| ||||||||||||||||||||||    
T  49499470 cccgccactaaggcaccacacagaaatatattattaacccgccactaaggcaa 49499418  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 43278369 - 43278468
Alignment:
Q  323 ttttaccctgaaactacattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtatg 422  Q
    ||||||| | ||| |||||||||||||| | |||||||| |||||||| ||||  ||||||||||||| ||||||| ||| ||||||||||||| |||||    
T  43278369 ttttaccataaaaatacattttaattatttttctttttataagacaagcattgctaccactatttaatgacacagccctaacacttaatatggacgtatg 43278468  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 409
Target Start/End: Complemental strand, 8730930 - 8730832
Alignment:
Q  312 aaaagattagattttaccctgaaacta--cattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcactta 409  Q
    ||||||||| |||||||||||||| ||  ||||||| |||| | |||||||||||||||||||||  ||| |||||||||||||| ||| ||||||||||    
T  8730930 aaaagattaaattttaccctgaaaatatacatttta-ttatttttctttttaaaagacaagaattaccactactatttaataacatagccctagcactta 8730832  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 409
Target Start/End: Complemental strand, 9082817 - 9082719
Alignment:
Q  312 aaaagattagattttaccctgaaacta--cattttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacagctctagcactta 409  Q
    ||||||||| |||||||||||||| ||  ||||||| |||| | |||||||||||||||||||||  ||| |||||||||||||| ||| ||||||||||    
T  9082817 aaaagattaaattttaccctgaaaatatacatttta-ttatttttctttttaaaagacaagaattaccactactatttaataacatagccctagcactta 9082719  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 43278240 - 43278326
Alignment:
Q  175 taatttatcaaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcaca 262  Q
    ||||||||||||| ||||||||||||||| || || |||||| ||||||| ||||||||||  |||||| | | || |||||||||||    
T  43278240 taatttatcaaaa-atctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacaaaccagttcacatcaca 43278326  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 7336936 - 7336982
Alignment:
Q  132 aaacaatgattagtcacacatatactacaatttagacttctattaat 178  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||    
T  7336936 aaacaatgattagccacacatatacttaaatttagacttctattaat 7336982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 7337098 - 7337173
Alignment:
Q  187 aaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttcacatcaca 262  Q
    ||||||||||||||||| || || |||||| ||||||| ||||||||||  |||||| | | || |||||||||||    
T  7337098 aaatctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacaaaccagttcacatcaca 7337173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 9104260 - 9104217
Alignment:
Q  354 tctttttaaaagacaagaattgtcaccactatttaataacacag 397  Q
    |||||| |||||||||||||||  ||||||||||||||||||||    
T  9104260 tcttttcaaaagacaagaattgctaccactatttaataacacag 9104217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 17542452 - 17542500
Alignment:
Q  64 atataatattaacccgccactaaggcaaccacaaagaaaataatagtaac 113  Q
    |||| ||||||||||||||||||||| |||||| |||| |||||||||||    
T  17542452 atatgatattaacccgccactaaggc-accacacagaatataatagtaac 17542500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 17542815 - 17542872
Alignment:
Q  340 attttaattatctgtctttttaaaagacaagaattgtcaccactatttaataacacag 397  Q
    ||||||||| | | |||||| || ||||||||||||  ||||||||||||||||||||    
T  17542815 attttaattgtttttcttttcaagagacaagaattgctaccactatttaataacacag 17542872  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 5004557 - 5004609
Alignment:
Q  39 cccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    ||||||||| | ||||||||  || ||||| ||||||||||||||||||||||    
T  5004557 cccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 5004609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 16975688 - 16975636
Alignment:
Q  39 cccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    ||||||||| | ||||||||  || ||||| ||||||||||||||||||||||    
T  16975688 cccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 16975636  T

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Target: scaffold0041 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 33278 - 33349
Alignment:
Q  184 aaaaaatctaacatctcttttccaacgtcacaaaaacatataaagcataatagcataaaatatatcatttca 255  Q
    ||||||| |||||| |||||||| || ||||||||||||||||| |||||||  ||||||||||||| ||||    
T  33278 aaaaaatgtaacatttcttttcctacatcacaaaaacatataaaacataataagataaaatatatcaattca 33349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 24163335 - 24163251
Alignment:
Q  39 cccgccacttaagcaccacacggatatataatattaacccgccactaaggcaaccacaaagaaaataatagtaacacattatcatgca 126  Q
    |||||||||||| |||||||     |||| ||||||||||  ||||||| ||||||||||||||||||   |||||||||||||||||    
T  24163335 cccgccacttaaacaccacaaaataatatgatattaacccatcactaagacaaccacaaagaaaataa---taacacattatcatgca 24163251  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 423
Target Start/End: Complemental strand, 24158959 - 24158893
Alignment:
Q  357 ttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtatgg 423  Q
    |||| ||| ||||||||||  ||||||| ||||||| ||||| ||||||| || |||||||||||||    
T  24158959 ttttcaaatacaagaattgctaccactaattaataagacagccctagcacgtagtatggatgtatgg 24158893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 32450055 - 32450107
Alignment:
Q  39 cccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    ||||||||| | ||||||||  || ||||| ||||||||||||||||||||||    
T  32450055 cccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 32450107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 243188 - 243257
Alignment:
Q  354 tctttttaaaagacaagaattgtcaccactatttaataacacagctctagcacttaatatggatgtatgg 423  Q
    |||||| |||||||||||||||  ||| ||||||||||||| ||| ||| |||||| || | ||||||||    
T  243188 tcttttcaaaagacaagaattgatacccctatttaataacaaagccctaacacttagtaagaatgtatgg 243257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 9237 - 9185
Alignment:
Q  39 cccgccacttaagcaccacacggatatataatattaacccgccactaaggcaa 91  Q
    ||||||||| | ||||||||  || ||||| ||||||||||||||||||||||    
T  9237 cccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaa 9185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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