View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16528_low_9 (Length: 458)
Name: NF16528_low_9
Description: NF16528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16528_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 443
Target Start/End: Original strand, 42941582 - 42942008
Alignment:
| Q |
14 |
cctgtggagaaggcaattagacttgttgtgattaaagagattaagggtgcacagtatggtgttcagattgagactgctgttagggaccgtttggcagccg |
113 |
Q |
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| T |
42941582 |
cctgtggagaaggcaattagacttgttgtgattaaagagattaagggtgcacagtatggtgttcagattgagactgctgttagggaccgtttggcagccg |
42941681 |
T |
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| Q |
114 |
atgacaaatatgaggatgaagaagaagaagctttggaaaaagtaattgaatttttccagtctaagtacttcaagaaacattcagtcatcacatatcattt |
213 |
Q |
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| T |
42941682 |
atgacaaatatgaggatgaagaagaagaagctttggaaaaagtaattgaatttttccagtctaagtacttcaagaaacattcagtcatcacatatcattt |
42941781 |
T |
|
| Q |
214 |
cccagcaaactctccaactgctgaggtaaaataatagcaagcagcattaggcattggctaccttaattgatcctattcattttaggttgattttaggtca |
313 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42941782 |
cccagcaaactctccaactgctgaggtaa---agtagcaagcagcattaggcactggctaccttaattgatcctattcattttaagttgattttaggtca |
42941878 |
T |
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| Q |
314 |
acttattattaacaacaatgacattaatcgtcatgtcatttacagctgctacatatgagttttgaatttcatctggttacaaaatcaaactcttaacaat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42941879 |
acttattattaacaacaatgacattaatcgtcatgtcatttacaactgctacatatgagttttgaatttcatccggttacaaaatcaaactcttaacaat |
42941978 |
T |
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| Q |
414 |
tgaattgacatctagatgacataaccaact |
443 |
Q |
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| T |
42941979 |
tgaattgacatctcgatgacataaccaact |
42942008 |
T |
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