View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16529_high_3 (Length: 377)
Name: NF16529_high_3
Description: NF16529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16529_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 18665191 - 18665539
Alignment:
| Q |
19 |
accataaggatgcatcccaaagccccttgaattatcaacacctaccccaactttatgttgcattttgaagtttctttgaccaaagtcctcattgacactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18665191 |
accataaggatgcatcccaaagccccttgaattatcaacacctaccccaactttatgttgcattttgaagtttctttgaccaaagtcctcattgacactt |
18665290 |
T |
|
| Q |
119 |
ccattatgctctgccaaattattttgaactacattctgggtgatattattatttacatgccctccatgtgcagtttgaccagatccataataaattcgct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18665291 |
ccattatgctctgccaaattattttgaactacattctgagtgatattattatttacatgccctccatgtgcagtttgaccagatccataataaattcgct |
18665390 |
T |
|
| Q |
219 |
ctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgatggtaatccgaagaatcattagcttgataatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18665391 |
ctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacaattttgatggtaatccgaagaatcattagcttgataatc |
18665490 |
T |
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| Q |
319 |
ccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18665491 |
ccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
18665539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 15078637 - 15078289
Alignment:
| Q |
19 |
accataaggatgcatcccaaagccccttgaattatcaacacctaccccaactttatgttgcattttgaagtttctttgaccaaagtcctcattgacactt |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15078637 |
accataaggatgcatcccaaagccccttgaattatcaacacctaccccaactttatgttgcattttgaagtttctttgaccaaagtcctcattgacactt |
15078538 |
T |
|
| Q |
119 |
ccattatgctctgccaaattattttgaactacattctgggtgatattattatttacatgccctccatgtgcagtttgaccagatccataataaattcgct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15078537 |
ccattatgctctgccaaattattttgaactacattctgggtgatattattatttacatgccctccatgcgcagtttgaccagatccataataaattcgct |
15078438 |
T |
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| Q |
219 |
ctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgatggtaatccgaagaatcattagcttgataatc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15078437 |
ctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgctggtaatccgaagaatcattagcttgataatc |
15078338 |
T |
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| Q |
319 |
ccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
367 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15078337 |
ccacctttcagcagcggtggaaatatcccttgatgtattagaccctttg |
15078289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 22272684 - 22272633
Alignment:
| Q |
70 |
tttatgttgcattttgaagtttctttgaccaaagtcctcattgacacttcca |
121 |
Q |
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||||||||||||||| ||||| ||||||||| |||| |||||||||||||| |
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| T |
22272684 |
tttatgttgcattttcaagttgctttgaccagagtctgcattgacacttcca |
22272633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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