View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16529_low_2 (Length: 434)
Name: NF16529_low_2
Description: NF16529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16529_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 31772781 - 31773198
Alignment:
| Q |
1 |
tgtagatagttaatatgtgagaataattaggaacaaattaacaaataggaacatatggatatttaatcatgtgataccaattaggagaatatttgtacgt |
100 |
Q |
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| T |
31772781 |
tgtagatagttaatatgtgagaataattaggaacaaattaacaaataggaacatatggatatttaatcatgtgataccaattaggagaatatttgtacgt |
31772880 |
T |
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| Q |
101 |
ataagcatgttaacatgtaataaaggggcaacacgtagatatatgttgaaacatagtaagaaatatatagttaaactaagtcaacaattagggccatatt |
200 |
Q |
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| T |
31772881 |
ataagcatgttaacatgtaataaaggggcaacacttagatataggttgaaacatagtaagaaatacatagttaaactaagtcaacaattagggccatatt |
31772980 |
T |
|
| Q |
201 |
cacattgtaaaaagtcctatagtaattatcataagtgatttattgcaagagttcaatttgactatgtcatttatttttattatgatgcatgatacactta |
300 |
Q |
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| T |
31772981 |
cacattgtaaaaagtcctatagtaattatcataagtgatttattgcaagagttcaatttgactatgtcatttatttttattatgatgcatgatacactta |
31773080 |
T |
|
| Q |
301 |
tcacactgaaacattcacacaattcacattcccttaagaatttctataatacatagcatttaagcacctaacaaatacaatacttaatacacacataatc |
400 |
Q |
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| T |
31773081 |
tcacactgaaacattcacacaattcacatttccttaagaatttctataatacatagcatttaagcacctaacaaatacaatacttaatacacacatagtc |
31773180 |
T |
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| Q |
401 |
atgagacaaatatgactc |
418 |
Q |
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| T |
31773181 |
atgagacaaatatgactc |
31773198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 234 - 418
Target Start/End: Original strand, 31770430 - 31770613
Alignment:
| Q |
234 |
agtgatttattgcaagagttcaatttgactatgtcatttatttttattatgatgcatgatacacttatcacactgaaacattcacacaattcacattccc |
333 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||| | |||| |||||||||| ||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
31770430 |
agtgatttattgcaagagttcaatttaactatgccatttattctcattaagatgcatgatgcacttatcacattgaaacattcacacatttcaccttccc |
31770529 |
T |
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| Q |
334 |
ttaagaatttctataatacatagcatttaagcacctaacaaatacaatacttaatacacacataatcatgagacaaatatgactc |
418 |
Q |
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| T |
31770530 |
ttggggctttccacaatgcataacatttaagcacctgacaaa-gcagcactcaatacacacataatcatgagacaaatatgactc |
31770613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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