View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16529_low_3 (Length: 386)

Name: NF16529_low_3
Description: NF16529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16529_low_3
NF16529_low_3
[»] chr4 (32 HSPs)
chr4 (15-372)||(1600477-1600834)
chr4 (179-305)||(55908576-55908702)
chr4 (183-372)||(546971-547160)
chr4 (188-372)||(12121314-12121498)
chr4 (251-372)||(53761692-53761813)
chr4 (254-372)||(570409-570524)
chr4 (214-372)||(7225766-7225924)
chr4 (202-372)||(8183901-8184071)
chr4 (202-372)||(1548297-1548465)
chr4 (239-306)||(3438474-3438541)
chr4 (239-304)||(1533898-1533963)
chr4 (244-372)||(659767-659895)
chr4 (202-305)||(8186962-8187065)
chr4 (242-372)||(553537-553667)
chr4 (239-304)||(1495830-1495895)
chr4 (242-368)||(1524397-1524523)
chr4 (241-303)||(1537677-1537739)
chr4 (241-298)||(558630-558687)
chr4 (217-365)||(644895-645043)
chr4 (239-303)||(6006455-6006519)
chr4 (237-372)||(1489267-1489402)
chr4 (240-305)||(1552676-1552738)
chr4 (181-303)||(532313-532432)
chr4 (239-303)||(1517407-1517471)
chr4 (241-325)||(12120052-12120136)
chr4 (250-305)||(641040-641095)
chr4 (250-301)||(1519062-1519113)
chr4 (333-372)||(1545831-1545870)
chr4 (237-367)||(370983-371113)
chr4 (249-303)||(21834296-21834350)
chr4 (237-282)||(1505017-1505062)
chr4 (332-372)||(1519143-1519183)
[»] chr8 (9 HSPs)
chr8 (191-372)||(18315133-18315314)
chr8 (183-299)||(32151432-32151545)
chr8 (202-372)||(17636268-17636442)
chr8 (242-372)||(28246206-28246336)
chr8 (287-372)||(21235616-21235701)
chr8 (199-372)||(34936031-34936204)
chr8 (261-372)||(27922566-27922674)
chr8 (239-329)||(44736578-44736668)
chr8 (183-224)||(17627911-17627952)
[»] chr6 (19 HSPs)
chr6 (202-372)||(7119215-7119382)
chr6 (202-372)||(7131693-7131860)
chr6 (250-372)||(6402918-6403040)
chr6 (250-372)||(6432219-6432341)
chr6 (250-372)||(6594525-6594647)
chr6 (186-306)||(9411476-9411596)
chr6 (179-372)||(6394922-6395112)
chr6 (242-372)||(11936186-11936316)
chr6 (242-372)||(11948166-11948296)
chr6 (179-372)||(6416024-6416214)
chr6 (179-368)||(6426573-6426759)
chr6 (250-369)||(7994101-7994220)
chr6 (251-302)||(8913904-8913955)
chr6 (250-302)||(6585156-6585208)
chr6 (179-305)||(6589174-6589297)
chr6 (185-370)||(6410066-6410248)
chr6 (250-304)||(14820819-14820873)
chr6 (250-301)||(6596847-6596898)
chr6 (335-372)||(12102324-12102361)
[»] chr2 (3 HSPs)
chr2 (179-305)||(1037512-1037638)
chr2 (184-372)||(32785628-32785813)
chr2 (240-368)||(45244994-45245122)
[»] chr3 (6 HSPs)
chr3 (179-372)||(13470583-13470773)
chr3 (250-365)||(51113700-51113815)
chr3 (179-365)||(51764291-51764474)
chr3 (181-367)||(514578-514764)
chr3 (265-372)||(51120827-51120934)
chr3 (217-299)||(1657378-1657460)
[»] chr1 (4 HSPs)
chr1 (179-368)||(19468350-19468536)
chr1 (179-300)||(9581198-9581319)
chr1 (179-300)||(9586766-9586887)
chr1 (190-303)||(7554546-7554659)
[»] chr7 (5 HSPs)
chr7 (181-372)||(10614651-10614839)
chr7 (244-305)||(7977703-7977764)
chr7 (179-316)||(10169981-10170115)
chr7 (179-316)||(10177506-10177640)
chr7 (251-303)||(15092071-15092123)
[»] chr5 (4 HSPs)
chr5 (179-371)||(41889402-41889594)
chr5 (203-372)||(32267533-32267699)
chr5 (183-372)||(41901390-41901576)
chr5 (254-325)||(28525116-28525187)
[»] scaffold0295 (1 HSPs)
scaffold0295 (201-305)||(494-598)
[»] scaffold0807 (1 HSPs)
scaffold0807 (255-305)||(1388-1438)
[»] scaffold0014 (1 HSPs)
scaffold0014 (248-313)||(88933-88998)
[»] scaffold0105 (1 HSPs)
scaffold0105 (244-372)||(499-627)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 372
Target Start/End: Complemental strand, 1600834 - 1600477
Alignment:
Q  15 cacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaatgagatcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600834 cacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaatgagatcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgt 1600735  T
Q  115 gttgtaaaccctcaaatcaagtgtctacgtttggctaacaattatgtgttacaagatacaaaggtcataatgtttgcttccaattttcccaattttcaac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  1600734 gttgtaaaccctcaaatcaagtgtctacgtttggctaacaattatgtgttacaagatacaaagatcataatgtttgcttccaattttcccaatttgcaac 1600635  T
Q  215 tgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  1600634 tgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcccagtgttc 1600535  T
Q  315 aataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600534 aataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 1600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 55908576 - 55908702
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    ||||| |||||||||||| ||| |||||||| ||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||| ||||||||||    
T  55908576 tcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatg 55908675  T
Q  279 ttctaagattagacatttgaacttagc 305  Q
    || |||| ||||||||||||| |||||    
T  55908676 ttgtaaggttagacatttgaatttagc 55908702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 372
Target Start/End: Complemental strand, 547160 - 546971
Alignment:
Q  183 aatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttct 282  Q
    ||||||| ||||||  || |||||||| |||||||||||||| ||   |||   |||||||||||||||  |||||||| | |||||||||||||||| |    
T  547160 aatgtttccttccatgttccccaatttgcaactgcttgatttaagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgt 547061  T
Q  283 aagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    ||||| || |||||||||||| |  | |||| | || |||| ||    ||||||||||||||||||| |||| |||||||| ||||||||    
T  547060 aagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttg 546971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 188 - 372
Target Start/End: Original strand, 12121314 - 12121498
Alignment:
Q  188 ttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagat 287  Q
    ||||||||  ||| |||||||| ||| |||||||||||||   ||||  |||||||||||||||||||||||  ||||| ||||||| ||||||  ||||    
T  12121314 ttgcttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattttccaagtcttaaggacatgttccgagat 12121413  T
Q  288 tagacatttgaacttagctcag-tgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    ||  |||||||||||| | ||| |||| |  || |||||||||  ||||||||||||||||||  ||||| || ||||||||||||    
T  12121414 tacgcatttgaacttaac-cagttgtttaggaaggaagctgcgccgaatgaactttgaagttcccaaactagaagtgttgaacttg 12121498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 53761692 - 53761813
Alignment:
Q  251 aaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttct 350  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||  ||||||||| | |||||||    ||||||||||||| |||||     
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcc 53761791  T
Q  351 taaactggaggtgttgaacttg 372  Q
     || || |||| ||||||||||    
T  53761792 caagctagaggcgttgaacttg 53761813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 372
Target Start/End: Complemental strand, 570524 - 570409
Alignment:
Q  254 gtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaa 353  Q
    |||||||||||||||||||   ||||| |||  |||| ||||||||||||||||| || |||| | |||| ||||| ||| |||||||||||||||| ||    
T  570524 gtatttgtcaagttttaag---atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaa 570428  T
Q  354 actggaggtgttgaacttg 372  Q
    ||| |||||||||||||||    
T  570427 actcgaggtgttgaacttg 570409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 372
Target Start/End: Original strand, 7225766 - 7225924
Alignment:
Q  214 ctgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgtt 313  Q
    |||||||||||||||  || |  |||||| | |||||||||  |||||||||||||| ||||||||| |||||||||||||||||||||| |  | |||     
T  7225766 ctgcttgatttgagctcttcccataacatgtatgaagaaggggtttgtcaagttttacggagatgttgtaagattagacatttgaacttatcctactgtc 7225865  T
Q  314 caataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    ||| | ||||||| ||    |||||||||||||||||  || ||||||| |||||||||    
T  7225866 caagagtgaagctacgcaacatgaactttgaagttctcgaattggaggtcttgaacttg 7225924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 8183901 - 8184071
Alignment:
Q  202 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 301  Q
    |||||||| || | ||||||||||||   |||| || |||| |||||| ||||||||  |||| |||||||||| |||| | |||||||| |||||||||    
T  8183901 cccaatttgcagcggcttgatttgagtcattgctttgacatttctgaaaaaggtattactcaaattttaaggagttgttgtgagattagagatttgaact 8184000  T
Q  302 tagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    ||||| |   | ||| ||||| |||| |  ||||||||||||||||||  ||||| |||||||||||||||    
T  8184001 tagcttacattccaaaaatgaggctgagcagaatgaactttgaagttccgaaactagaggtgttgaacttg 8184071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 1548297 - 1548465
Alignment:
Q  202 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 301  Q
    |||||||| ||||||||||||||||  | ||||| |  |||||| || |||||||||||| ||||||||   ||||||| |||||||||||| |||||||    
T  1548297 cccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttta---agatgttgtaagattagacagttgaact 1548393  T
Q  302 tagctcagtgttcaataatgaagctgc-gaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    ||||||   ||| || | ||||||| |   ||| ||||||||||| |||  |||||||||||||||||||||    
T  1548394 tagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttg 1548465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 3438474 - 3438541
Alignment:
Q  239 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagct 306  Q
    |||||||||| |||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||    
T  3438474 acatatctgacgaaggtgttattcaagttttaaggagatgttgtaagattagacatttgaacttagct 3438541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 1533898 - 1533963
Alignment:
Q  239 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttag 304  Q
    |||||||||||||||||||| |||| |||||||||||||||| |||||| | ||||||||||||||    
T  1533898 acatatctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaacttag 1533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 659895 - 659767
Alignment:
Q  244 tctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttg 343  Q
    |||||||||| |||| ||||| ||||||||||||||| ||| |||||| |||| ||||||||    ||||||| |  |||||| |||| ||| || ||||    
T  659895 tctgaagaagatattggtcaaattttaaggagatgttgtaacattagatatttaaacttagcctgctgttcaagagggaagctacgagtaataaattttg 659796  T
Q  344 aagttcttaaactggaggtgttgaacttg 372  Q
    ||||||  ||||| |||||||||||||||    
T  659795 aagttcccaaactagaggtgttgaacttg 659767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 202 - 305
Target Start/End: Original strand, 8186962 - 8187065
Alignment:
Q  202 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 301  Q
    |||||||| ||  |||||||||||||   ||||  | ||||||||||||||||||||||||||||||| | |||||||| | |||||||  |||||||||    
T  8186962 cccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaact 8187061  T
Q  302 tagc 305  Q
    ||||    
T  8187062 tagc 8187065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 372
Target Start/End: Complemental strand, 553667 - 553537
Alignment:
Q  242 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactt 341  Q
    |||||||||||| | ||  ||| |||||||||| ||||| ||| |||||||||||||||||| | |  ||||||| | ||||| | ||   | |||||||    
T  553667 tatctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactt 553568  T
Q  342 tgaagttcttaaactggaggtgttgaacttg 372  Q
    | ||||||| |||||||||||||||||||||    
T  553567 taaagttctcaaactggaggtgttgaacttg 553537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 1495830 - 1495895
Alignment:
Q  239 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttag 304  Q
    |||||||||||||||||||| |||| |||||||||||||||| |||||| | ||||||| ||||||    
T  1495830 acatatctgaagaaggtattggtcatgttttaaggagatgttgtaagatgacacatttggacttag 1495895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 368
Target Start/End: Original strand, 1524397 - 1524523
Alignment:
Q  242 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactt 341  Q
    |||||||||||||||||  ||| |||||||||||||||| |||  |||| ||||||||||||||  | ||||| | |||  | || |  |||||||||||    
T  1524397 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaacttcatggaatgaactt 1524496  T
Q  342 tgaagttcttaaactggaggtgttgaa 368  Q
    ||||||||  ||  |||||||||||||    
T  1524497 tgaagttcccaatttggaggtgttgaa 1524523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 1537677 - 1537739
Alignment:
Q  241 atatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 303  Q
    ||||||||||||||||||| |||||||||||||| ||||||  || |||| ||||||||||||    
T  1537677 atatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaggcatttgaactta 1537739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 558687 - 558630
Alignment:
Q  241 atatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttga 298  Q
    ||||| ||| ||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  558687 atatcagaaaaaggtatttgtcatgttttaaggacatgttctaacattagacatttga 558630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 365
Target Start/End: Complemental strand, 645043 - 644895
Alignment:
Q  217 cttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaa 316  Q
    ||||||||||||  |||||   || ||||||||||||||||   ||| ||||||| || ||||| ||| |||||||||||||| ||| |||  |||||||    
T  645043 cttgatttgagccattgcaaagacgtatctgaagaaggtatggttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaa 644944  T
Q  317 taatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgtt 365  Q
     | ||||||| |    | |||||||||||||||  ||||||||||||||    
T  644943 gactgaagctacttacattgaactttgaagttcccaaactggaggtgtt 644895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 6006519 - 6006455
Alignment:
Q  239 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 303  Q
    |||||||||| |||||| ||  |||||||||||||| ||||  ||||||||||||||||||||||    
T  6006519 acatatctgatgaaggtgttgctcaagttttaaggaaatgtagtaagattagacatttgaactta 6006455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 372
Target Start/End: Original strand, 1489267 - 1489402
Alignment:
Q  237 taacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatg 336  Q
    |||||||||||||||||||||||  || ||||||| || ||||||| | ||||| ||||||||||||      | || |  || ||||||| | ||||||    
T  1489267 taacatatctgaagaaggtattttccatgttttaaagacatgttctgatattaggcatttgaacttaagaagatctttaggaaagaagctgtgcggaatg 1489366  T
Q  337 aactttgaagttcttaaactggaggtgttgaacttg 372  Q
    |||||||||||||  ||||| || ||||||||||||    
T  1489367 aactttgaagttcccaaactagaagtgttgaacttg 1489402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 1552676 - 1552738
Alignment:
Q  240 catatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 305  Q
    |||||| || |||||||||||| ||||||||||   ||||| ||||||||||||||||||||||||    
T  1552676 catatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacatttgaacttagc 1552738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 532432 - 532313
Alignment:
Q  181 ataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgtt 280  Q
    ||||||||||| |||| ||| |||||||| ||  |||| || ||||||  |||   |||||||||| |||||||||||| ||||||||| | ||||||      
T  532432 ataatgtttgcatccattttccccaatttacatatgctggacttgagctattgttataacatatctaaagaaggtatttatcaagttttgaagagatg-- 532335  T
Q  281 ctaagattagacatttgaactta 303  Q
     |||||| ||| |||||||||||    
T  532334 -taagatcagagatttgaactta 532313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 1517407 - 1517471
Alignment:
Q  239 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 303  Q
    |||||||||||||||||||   ||| |||||||||||||||| |||||| | ||||||| |||||    
T  1517407 acatatctgaagaaggtatcgatcatgttttaaggagatgttgtaagatgacacatttggactta 1517471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 12120052 - 12120136
Alignment:
Q  241 atatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagc 325  Q
    |||||| | ||||||||| |||||||||||| || | ||  ||||||||||||||||||||| || || ||||||| | ||||||    
T  12120052 atatctaacgaaggtattggtcaagttttaaagaaaagtagtaagattagacatttgaactttgcccactgttcaagactgaagc 12120136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 641095 - 641040
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 305  Q
    ||||| |||| |||||||||||||| ||||| |||  |||||||||||||||||||    
T  641095 gaaggaatttttcaagttttaaggatatgttgtaatgttagacatttgaacttagc 641040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 1519062 - 1519113
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 301  Q
    ||||||||||||||||||||||| |||||||  | |||||| ||||||||||    
T  1519062 gaaggtatttgtcaagttttaagaagatgttgaaggattaggcatttgaact 1519113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 372
Target Start/End: Complemental strand, 1545870 - 1545831
Alignment:
Q  333 aatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  1545870 aatgaactttaaagttcctaaactggaggtgttgaacttg 1545831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 367
Target Start/End: Complemental strand, 371113 - 370983
Alignment:
Q  237 taacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatg 336  Q
    ||||||||||||  |  |||| |||| ||||||||  ||||| ||||||||||| |||||||||||||| || || |||| | ||||| ||   || |||    
T  371113 taacatatctgacaacagtatctgtcgagttttaaatagatggtctaagattaggcatttgaacttagcccactgctcaagagtgaagttgtatggtatg 371014  T
Q  337 aactttgaagttcttaaactggaggtgttga 367  Q
    ||| ||  |||||| ||||| ||||||||||    
T  371013 aacattagagttctcaaacttgaggtgttga 370983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 21834296 - 21834350
Alignment:
Q  249 agaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 303  Q
    ||||||||||||  |||||||||||| ||||| ||||||||  ||||||||||||    
T  21834296 agaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaactta 21834350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 1505017 - 1505062
Alignment:
Q  237 taacatatctgaagaaggtatttgtcaagttttaaggagatgttct 282  Q
    |||||||||||||||||||||||  || |||||||||| |||||||    
T  1505017 taacatatctgaagaaggtattttccatgttttaaggacatgttct 1505062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 1519143 - 1519183
Alignment:
Q  332 gaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttg 1519183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 191 - 372
Target Start/End: Original strand, 18315133 - 18315314
Alignment:
Q  191 cttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattag 290  Q
    |||||| ||| |||||||| ||  ||||||||||||||   |||  ||||||| |||||||||||||||||||||||||| | || |||||| |||||||    
T  18315133 cttccattttccccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattag 18315232  T
Q  291 acatttgaacttagctcagtg-ttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    ||| ||||||||||||| ||| ||||| ||||||||| || |||||||||||| ||||||  |||||||||||||||||||||    
T  18315233 acagttgaacttagctc-gtgattcaagaatgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttg 18315314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 32151545 - 32151432
Alignment:
Q  183 aatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttct 282  Q
    |||||||||||||| ||| || ||||| |||||||||||||||||  |||||  |||||||||||||||||| |||||||||||||||   ||||| |||    
T  32151545 aatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagtttta---agatgctct 32151449  T
Q  283 aagattagacatttgaa 299  Q
     ||||||| ||||||||    
T  32151448 gagattaggcatttgaa 32151432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 17636268 - 17636442
Alignment:
Q  202 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 301  Q
    |||||||| || |||||||||||  |   ||||| ||| ||||| ||  ||||||||||||||||||||||| |||||||||| ||||| ||||||||||    
T  17636268 cccaatttgcagctgcttgatttacgagattgcaataaaatatcagagaaaggtatttgtcaagttttaaggggatgttctaatattaggcatttgaact 17636367  T
Q  302 tagctcagtgttcaataatgaagct---gcga-ggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    |||  |  ||||||| | |||| ||    |||  ||||||||||||||||||  ||| |||||||||||||||||    
T  17636368 taggccgatgttcaagagtgaaactacatcgatcgaatgaactttgaagttcccaaattggaggtgttgaacttg 17636442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 28246206 - 28246336
Alignment:
Q  242 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactt 341  Q
    |||||||||||||||||  ||| ||||||| || ||||| ||| |||||||||||||| ||| |||  ||||||| | ||||||| |    | |||||||    
T  28246206 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgttgttcaagactgaagctacatacattgaactt 28246305  T
Q  342 tgaagttcttaaactggaggtgttgaacttg 372  Q
    ||||||||  ||||||||||||||| |||||    
T  28246306 tgaagttcccaaactggaggtgttggacttg 28246336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 21235701 - 21235616
Alignment:
Q  287 ttagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    |||| ||||||||||||||||| || |||| | |||| ||| | ||| |||||||||||||||  |||||||||||||||||||||    
T  21235701 ttaggcatttgaacttagctcactgctcaaaagtgaaactgtgtggagtgaactttgaagttcccaaactggaggtgttgaacttg 21235616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 372
Target Start/End: Original strand, 34936031 - 34936204
Alignment:
Q  199 tttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttga 298  Q
    ||||||||||| || |||||||||||||||  ||||| |  ||||||| |  ||||||||| ||| |||||||||||||||| | | ||||||||||||     
T  34936031 tttcccaatttgcatctgcttgatttgagcgattgcagtggcatatctaatcaaggtatttatcatgttttaaggagatgttgtgacattagacatttgt 34936130  T
Q  299 acttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    |||| ||  | ||||||| | |||| || |   |||||| |||||| ||||  ||||| ||||||||| |||||    
T  34936131 acttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttccaaaactagaggtgttggacttg 34936204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 372
Target Start/End: Complemental strand, 27922674 - 27922566
Alignment:
Q  261 tcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggag 360  Q
    |||||||||| ||| ||| | ||| |||||||||||||||||| |  ||||||||||  |||| ||   || |||||||||||||||||  ||| |||||    
T  27922674 tcaagttttagggatatgctgtaacattagacatttgaacttatccaagtgttcaatggtgaaact---agaaatgaactttgaagttcccaaattggag 27922578  T
Q  361 gtgttgaacttg 372  Q
    ||||||||||||    
T  27922577 gtgttgaacttg 27922566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 329
Target Start/End: Complemental strand, 44736668 - 44736578
Alignment:
Q  239 acatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcg 329  Q
    |||||| |||||||||||||| ||| |||||||||| ||||||||| || | |||||| ||||||    | ||||||| ||||||||||||    
T  44736668 acatatttgaagaaggtatttctcatgttttaaggacatgttctaacataacacattttaacttaaacaactgttcaagaatgaagctgcg 44736578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 17627911 - 17627952
Alignment:
Q  183 aatgtttgcttccaattttcccaattttcaactgcttgattt 224  Q
    |||||||||||||| ||| |||||||| ||||||||||||||    
T  17627911 aatgtttgcttccattttccccaatttgcaactgcttgattt 17627952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 372
Target Start/End: Complemental strand, 7119382 - 7119215
Alignment:
Q  202 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 301  Q
    |||||||| ||||| ||||||||||  | ||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||    
T  7119382 cccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaact 7119286  T
Q  302 tagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    |||| || ||||||| | ||||||| |  |||||||||||||  ||||   | ||||||||||||||||||    
T  7119285 tagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttg 7119215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 372
Target Start/End: Complemental strand, 7131860 - 7131693
Alignment:
Q  202 cccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 301  Q
    |||||||| ||||| ||||||||||  | ||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||    
T  7131860 cccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaact 7131764  T
Q  302 tagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    |||| || ||||||| | ||||||| |  |||||||||||||  ||||   | ||||||||||||||||||    
T  7131763 tagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttg 7131693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 250 - 372
Target Start/End: Complemental strand, 6403040 - 6402918
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 349  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||  |||||||| | ||||||| |  ||||| ||||||| |||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttc 6402941  T
Q  350 ttaaactggaggtgttgaacttg 372  Q
       |||| || ||||||||||||    
T  6402940 cccaactagaagtgttgaacttg 6402918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 250 - 372
Target Start/End: Complemental strand, 6432341 - 6432219
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 349  Q
    ||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||  | |||  || | ||||||| |  |||||||||||||||||||    
T  6432341 gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttc 6432242  T
Q  350 ttaaactggaggtgttgaacttg 372  Q
      || ||| ||||||||||||||    
T  6432241 ccaagctgaaggtgttgaacttg 6432219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 250 - 372
Target Start/End: Original strand, 6594525 - 6594647
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 349  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |   |||||||| | ||||||| |  ||||| ||||||  |||||    
T  6594525 gaaggtatttgtcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttc 6594624  T
Q  350 ttaaactggaggtgttgaacttg 372  Q
      ||||||||||||||| |||||    
T  6594625 ccaaactggaggtgttgtacttg 6594647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 306
Target Start/End: Complemental strand, 9411596 - 9411476
Alignment:
Q  186 gtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaag 285  Q
    ||||||||||| ||| |||||||| || ||||||||||||||| | ||   |||||||||| | ||||||||||  || |||||||||||||||  |||     
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgtggtaac 9411497  T
Q  286 attagacatttgaacttagct 306  Q
    ||||||||||||||| |||||    
T  9411496 attagacatttgaacctagct 9411476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 372
Target Start/End: Complemental strand, 6395112 - 6394922
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    ||||||||||| |||||| ||| |||||||| || || ||||||||||   |||||    | ||||||||||   |||||||||||||||||| || |||    
T  6395112 tcataatgtttacttccattttccccaatttacagctacttgatttgacacgttgctcacaaatatctgaag---gtatttgtcaagttttaaagaaatg 6395016  T
Q  279 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    || |||| ||| ||||||||||||||||   ||||||| | |||| || |  ||||||||||||| |||||   | ||||||||||||||||||    
T  6395015 ttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttg 6394922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 11936186 - 11936316
Alignment:
Q  242 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactt 341  Q
    |||||||||||||||||  ||| ||||||| || ||||| ||| |||||||||||||| ||| |||  ||||||| | ||||||| ||   | |||||||    
T  11936186 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactt 11936285  T
Q  342 tgaagttcttaaactggaggtgttgaacttg 372  Q
    ||||||||  ||||||||||||||| |||||    
T  11936286 tgaagttcccaaactggaggtgttggacttg 11936316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 11948166 - 11948296
Alignment:
Q  242 tatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactt 341  Q
    |||||||||||||||||  ||| ||||||| || ||||| ||| |||||||||||||| ||| |||  ||||||| | ||||||| ||   | |||||||    
T  11948166 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactt 11948265  T
Q  342 tgaagttcttaaactggaggtgttgaacttg 372  Q
    ||||||||  ||||||||||||||| |||||    
T  11948266 tgaagttcccaaactggaggtgttggacttg 11948296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 372
Target Start/End: Complemental strand, 6416214 - 6416024
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    ||||||||||| ||||||| || |||||||| || |||||||||||||   |||| | |  | |||||||||   |||||||||||||||||| || |||    
T  6416214 tcataatgttttcttccaacttccccaatttgcagctgcttgatttgaatcgttgtaatctcttatctgaag---gtatttgtcaagttttaaagatatg 6416118  T
Q  279 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    || ||||||| | ||||||||||||||    |||  || | ||||||| |  |||||| |||||| |||||  || ||||||||||||||||||    
T  6416117 ttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttg 6416024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 6426759 - 6426573
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    ||||||||| |||||||| ||| |||||||| || || ||||||||||    ||||  | | ||||||||||   |||||||| |||||||||||| |||    
T  6426759 tcataatgtatgcttccattttccccaatttacagctacttgatttgaaggtttgccgtgaaatatctgaag---gtatttgtgaagttttaaggaaatg 6426663  T
Q  279 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaa 368  Q
    || |||| ||| ||||||||||||||||   |||||||   |||| || |  ||||||||||||| |||||   | ||||||||||||||    
T  6426662 ttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaa 6426573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 369
Target Start/End: Original strand, 7994101 - 7994220
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 349  Q
    |||||||||||| | |||||||||| ||||| |||||| || ||||||||| ||||  | ||| ||| | ||||||| | |||||||||||||| |||||    
T  7994101 gaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttc 7994200  T
Q  350 ttaaactggaggtgttgaac 369  Q
      || || ||||||||||||    
T  7994201 cgaagctagaggtgttgaac 7994220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 8913904 - 8913955
Alignment:
Q  251 aaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactt 302  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  8913904 aaggtatttgtcaagttttaagaagatgttgtaagattaaacatttgaactt 8913955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 6585156 - 6585208
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactt 302  Q
    |||||||||||||| |||||||||||||||| ||| ||||| |||||||||||    
T  6585156 gaaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactt 6585208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 6589174 - 6589297
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    |||||||||||||||||| ||| ||||||||  |  |||||||||| |    ||| | |||||||||| |||   ||||||||||||| || || |||||    
T  6589174 tcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaag---gtatttgtcaagtattgagaagatg 6589270  T
Q  279 ttctaagattagacatttgaacttagc 305  Q
    || ||||||||| ||||||||||||||    
T  6589271 ttgtaagattaggcatttgaacttagc 6589297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 370
Target Start/End: Complemental strand, 6410248 - 6410066
Alignment:
Q  185 tgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaa 284  Q
    |||||||||||| |||||||||||| ||||| ||||||||||   |||||    | ||||||   |||||||||||||||||||||  || ||||| |||    
T  6410248 tgtttgcttccatttttcccaatttacaactacttgatttgacgggttgccagcaaatatct---gaaggtatttgtcaagttttacagaaatgttgtaa 6410152  T
Q  285 gattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaact 370  Q
    | |||  |||||| |||||||  | ||   || | ||||||| |  |||||||||||||||||||  || ||| ||||||||||||    
T  6410151 gcttaagcatttggacttagcctattgcaaaaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaact 6410066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 14820873 - 14820819
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttag 304  Q
    |||||||||||||||| |||||||| ||||| |||| ||| ||||||||||||||    
T  14820873 gaaggtatttgtcaaggtttaaggaaatgttgtaagcttaaacatttgaacttag 14820819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 6596847 - 6596898
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaact 301  Q
    |||||||||||||||||||| |||||||||  ||||||||  ||||||||||    
T  6596847 gaaggtatttgtcaagttttcaggagatgtgataagattaagcatttgaact 6596898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 12102361 - 12102324
Alignment:
Q  335 tgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    |||||||||||||||  |||||||||||||||||||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttg 12102324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 1037512 - 1037638
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    ||||| |||||||||||| ||| |||||||| ||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||||||||||||||    
T  1037512 tcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatg 1037611  T
Q  279 ttctaagattagacatttgaacttagc 305  Q
    || |||| ||||||||||||| |||||    
T  1037612 ttgtaaggttagacatttgaatttagc 1037638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 184 - 372
Target Start/End: Original strand, 32785628 - 32785813
Alignment:
Q  184 atgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttcta 283  Q
    |||||| |||| | |||| ||||||| ||||| ||||||||||||  ||||  |||||||||||||||||||||||||||| |||||   ||||||||||    
T  32785628 atgttttcttctattttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttcta 32785724  T
Q  284 agattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    |||||||||||||||| || |  || | ||||| |||  |||  ||  ||||||||||| ||| ||  ||||| |||||||||||||||    
T  32785725 agattagacatttgaatttggaccacttttcaagaatcgagcaccgtcgaatgaactttaaagctcccaaactagaggtgttgaacttg 32785813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 368
Target Start/End: Original strand, 45244994 - 45245122
Alignment:
Q  240 catatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaac 339  Q
    |||| ||| |||||| || ||||| |||||||||||||||| ||| ||||| ||||| ||||||| |   ||||||| | || |  | || ||||| |||    
T  45244994 cataactggagaaggaatgtgtcatgttttaaggagatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattacgtggaataaac 45245093  T
Q  340 tttgaagttcttaaactggaggtgttgaa 368  Q
    ||||||||||  ||||| |||||||||||    
T  45245094 tttgaagttccaaaacttgaggtgttgaa 45245122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 372
Target Start/End: Original strand, 13470583 - 13470773
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    |||||||||||||||||||||| |||||||| || |||||||||||||   |||||| |  | ||||   | |||||||||||||||||||||||| |||    
T  13470583 tcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatc---aaaaggtatttgtcaagttttaaggatatg 13470679  T
Q  279 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    || ||||||||| ||||||||||||||  | |||  || | ||||||| |  |||||||||||||  ||||  || ||||||||||||||||||    
T  13470680 ttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttg 13470773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 365
Target Start/End: Original strand, 51113700 - 51113815
Alignment:
Q  250 gaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttc 349  Q
    |||||||||||||||||||||| |||||||| ||| ||||| |||||||| |||||| | ||||||| | ||||||| |  |||||||||||||||| ||    
T  51113700 gaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctc 51113799  T
Q  350 ttaaactggaggtgtt 365  Q
      ||||||||||||||    
T  51113800 ccaaactggaggtgtt 51113815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 179 - 365
Target Start/End: Original strand, 51764291 - 51764474
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    |||||||||||||||||| ||| |||||||| || ||||||||||| |    ||||| |  ||||||| |||   || | ||| ||||||||||||||||    
T  51764291 tcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaag---gtgtctgtgaagttttaaggagatg 51764387  T
Q  279 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgtt 365  Q
    |||||||||||| ||||||||| || |  | ||||||| | ||||||| |  ||||||||||||| |||||  || |||||||||||    
T  51764388 ttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggtgtt 51764474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 367
Target Start/End: Original strand, 514578 - 514764
Alignment:
Q  181 ataatgtttgcttccaattttccc-aattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgt 279  Q
    |||||||||||||| ||||||||| ||||| || ||  |||||||||||  |||   ||||||||||||  || |||| ||||||||||||| ||||||     
T  514578 ataatgtttgcttc-aattttcccgaatttgcagctaattgatttgagctattgtgataacatatctgacaaaagtatctgtcaagttttaaagagatgg 514676  T
Q  280 tctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttga 367  Q
    ||||||||||| |||||||||||||| || || |||| | ||||| ||   || |||||| ||  |||||| ||||| ||||||||||    
T  514677 tctaagattaggcatttgaacttagcccactgctcaagagtgaagttgtacggtatgaacattagagttctcaaacttgaggtgttga 514764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 372
Target Start/End: Original strand, 51120827 - 51120934
Alignment:
Q  265 gttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgt 364  Q
    |||||| ||||||||| ||| |||||||| ||||||||  |    ||||||| | |||| ||||  |||||||||||||||||||| ||| |||||||||    
T  51120827 gttttatggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgt 51120926  T
Q  365 tgaacttg 372  Q
    ||||||||    
T  51120927 tgaacttg 51120934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 299
Target Start/End: Complemental strand, 1657460 - 1657378
Alignment:
Q  217 cttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaa 299  Q
    ||||||||||||  |||||   ||||||||||||||||||||  ||| ||||||| || ||||| ||| ||||||||||||||    
T  1657460 cttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 1657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 368
Target Start/End: Original strand, 19468350 - 19468536
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||| |   ||||   ||||||| ||||   | |||||||||||||||||||| ||    
T  19468350 tcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatcggaag---gcatttgtcaagttttaaggaggtg 19468446  T
Q  279 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaa 368  Q
    |||||| ||||| ||||| |||||||| || ||||||| | |||| || |  ||| ||||||||| |||||  || ||||||||||||||    
T  19468447 ttctaatattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaa 19468536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 9581319 - 9581198
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    |||||||||||||||| | ||| |||||||| || ||||||||| || ||  ||||  |||||||||| ||  ||||||||||||||||||||  |||||    
T  9581319 tcataatgtttgcttcaattttccccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtcaagttttaaaaagatg 9581220  T
Q  279 ttctaagattagacatttgaac 300  Q
    || | |||||||||||||||||    
T  9581219 ttgtcagattagacatttgaac 9581198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 9586887 - 9586766
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    |||||||||||||||| | ||| |||||||| || ||||||||| || ||  ||||  |||||||||| ||  |||||||||||||||||||   |||||    
T  9586887 tcataatgtttgcttcaattttccccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgtcaagttttacaaagatg 9586788  T
Q  279 ttctaagattagacatttgaac 300  Q
    || | |||||||||||||||||    
T  9586787 ttgtcagattagacatttgaac 9586766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 7554659 - 7554546
Alignment:
Q  190 gcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagatta 289  Q
    |||||||  |||||||||||  | |||||||||||||  | ||||  | |||||||| |||||||||||| |||  ||||||| ||||||  ||| ||||    
T  7554659 gcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacatta 7554560  T
Q  290 gacatttgaactta 303  Q
    ||||||||||||||    
T  7554559 gacatttgaactta 7554546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 372
Target Start/End: Complemental strand, 10614839 - 10614651
Alignment:
Q  181 ataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgtt 280  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||   |||||| |  | ||| |||||   ||||||||||||||||||||| |||||    
T  10614839 ataaagtttgcttccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttatatgaag---gtatttgtcaagttttaaggatatgtt 10614743  T
Q  281 ctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
     ||||||||| ||||||||||||||  | |||  || | ||||||| |  ||||||||| |||  ||||  || ||||||||||||||||||    
T  10614742 gtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttg 10614651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 7977764 - 7977703
Alignment:
Q  244 tctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 305  Q
    ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||| ||||    
T  7977764 tctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagc 7977703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 10169981 - 10170115
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    ||||||||||| |||||| |||||| |||||  | ||| ||||||||| |  ||||| | ||||||| ||||   | |||||||||||||||||||| ||    
T  10169981 tcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacatatcggaag---gcatttgtcaagttttaaggaggtg 10170077  T
Q  279 ttctaagattagacatttgaacttagctcagtgttcaa 316  Q
    |||||| ||||| ||||| || ||||| || |||||||    
T  10170078 ttctaatattaggcatttaaatttagcccactgttcaa 10170115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 10177506 - 10177640
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    ||||||||||| |||||| |||||| |||||  | ||| ||||||||| |  ||||| | ||||||| ||||   | |||||||||||||||||||| ||    
T  10177506 tcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacatatcggaag---gcatttgtcaagttttaaggaggtg 10177602  T
Q  279 ttctaagattagacatttgaacttagctcagtgttcaa 316  Q
    |||||| ||||| ||||| || ||||| || |||||||    
T  10177603 ttctaatattaggcatttaaatttagcccactgttcaa 10177640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 15092071 - 15092123
Alignment:
Q  251 aaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactta 303  Q
    ||||||||| |||||||||||||| ||||| |||| ||| |||||||||||||    
T  15092071 aaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaactta 15092123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 371
Target Start/End: Original strand, 41889402 - 41889594
Alignment:
Q  179 tcataatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatg 278  Q
    |||||||||||||||||| ||| || ||||| || || ||||||||||||| |||   |  ||||| ||| |||||||||  |||||||||||||| |||    
T  41889402 tcataatgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtattactcaagttttaaggatatg 41889501  T
Q  279 ttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaactt 371  Q
    || ||| |||||| ||||||||||| |    ||||||||| ||||||| |  | |||||||||| ||||||  ||| ||||||||||||||||    
T  41889502 ttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaactt 41889594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 372
Target Start/End: Complemental strand, 32267699 - 32267533
Alignment:
Q  203 ccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaactt 302  Q
    ||||||| || |||||||||||||||| |||   |  ||||||||||||||||||   |||| ||||||||| ||||| ||| |||||||||||||||||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T
Q  303 agctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    | | |||||||||| | |||| ||   || |||||||||||||||||  ||| ||||||| |||||||||    
T  32267599 atcccagtgttcaacagtgaaact---agaaatgaactttgaagttcccaaattggaggtattgaacttg 32267533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 372
Target Start/End: Original strand, 41901390 - 41901576
Alignment:
Q  183 aatgtttgcttccaattttcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttct 282  Q
    |||||| ||||||| ||| |||||||| || |||||||||||||||| |||   |  ||||| |||||||||||||  ||||||||||||||  |||| |    
T  41901390 aatgttcgcttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaaggatgtgttgt 41901489  T
Q  283 aagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttg 372  Q
    || |||||||||||||||||| |  ||||||| ||| |||  ||   || |||  ||||||||||||  |||||||||||||||||||||    
T  41901490 aacattagacatttgaacttatccaagtgttccatagtgagact---agaaatagactttgaagttcccaaactggaggtgttgaacttg 41901576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 28525187 - 28525116
Alignment:
Q  254 gtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagc 325  Q
    ||||||||||||||||||||||||||| |||||| ||  ||||||| |||    | ||||||||||||||||    
T  28525187 gtatttgtcaagttttaaggagatgttgtaagatgagggatttgaaattaagcaactgttcaataatgaagc 28525116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 494 - 598
Alignment:
Q  201 tcccaattttcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaac 300  Q
    ||||||||| ||| | ||||||||||||   |||  ||||||||||||||||||||||||| ||||| |||||||||||| ||||  ||||||||||||     
T  494 tcccaatttacaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaat 593  T
Q  301 ttagc 305  Q
    |||||    
T  594 ttagc 598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 1388 - 1438
Alignment:
Q  255 tatttgtcaagttttaaggagatgttctaagattagacatttgaacttagc 305  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1388 tatttgtcaagttttaaggagatgttataagattagacatttgaacttagc 1438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 88998 - 88933
Alignment:
Q  248 aagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgtt 313  Q
    |||||||||||  |||  ||||||||||||||| |||||||||||||||||||||| || ||||||    
T  88998 aagaaggtattgatcagattttaaggagatgttgtaagattagacatttgaacttaactgagtgtt 88933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 627 - 499
Alignment:
Q  244 tctgaagaaggtatttgtcaagttttaaggagatgttctaagattagacatttgaacttagctcagtgttcaataatgaagctgcgaggaatgaactttg 343  Q
    |||||||||| |||||| ||| ||||||| ||||||| | | |||||| | |||||||||||  ||| ||||| | ||| ||| ||   |||||||||||    
T  627 tctgaagaagatatttgacaaattttaagtagatgttgtgaaattagagaattgaacttagcctagttttcaagagtgaggctacgcaaaatgaactttg 528  T
Q  344 aagttcttaaactggaggtgttgaacttg 372  Q
    |||||  ||||||||||  ||||||||||    
T  527 aagtttctaaactggagtcgttgaacttg 499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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