View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16530_low_1 (Length: 582)
Name: NF16530_low_1
Description: NF16530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16530_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 48923728 - 48923394
Alignment:
| Q |
16 |
ggaacattgcaaagggatgctcctcctaatcagctctcgccaagttaccctgagcaagaatggtgacannnnnnnctctcattgctcagtgatatgtgag |
115 |
Q |
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| T |
48923728 |
ggaacattgcaaagggatgctcctcctaatcagctcccgccaagttaccctgagcaagaatggtgacatttttttctctcattgctcagtgatatgtgag |
48923629 |
T |
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| Q |
116 |
agataagattatcaaggaaccattgaagacgtttgagaggattaacaaggagattgccaattagttgatcacatgacccacaactctgtgatttgaaatg |
215 |
Q |
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| T |
48923628 |
agataagattatcaaggaaccattgaagacgtttgagaggattaacaaggagattgctaattagttgatcacatgacccacaactctgtgatttgaaatg |
48923529 |
T |
|
| Q |
216 |
ggtaagtccatttatatttatagcttgagcggtctagtttgatttaagcactaaccgatgtgggttttagtcagaaacatacacacccaccactcactca |
315 |
Q |
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| T |
48923528 |
agtaagtccatttatatttatagcttgagcggtctagtttgatttaagcactaaccgatgtgggttttagtcagaaacatacacacccaccactcactca |
48923429 |
T |
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| Q |
316 |
ctccctcaacgctccttcaagttgctcaataatca |
350 |
Q |
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| T |
48923428 |
ctccctcaacgctccttcaagttgctcaataatca |
48923394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 382 - 582
Target Start/End: Complemental strand, 48923396 - 48923185
Alignment:
| Q |
382 |
tcacactcattgaaatgcttaatatttccttccactttcatacgtttcgaatcattgtagcttatagcttatatatctcaaagcaagcacaaacatgtat |
481 |
Q |
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| T |
48923396 |
tcacactcattgaaatgcttaatatttccttccactttcatacgtttcaaatcattgtagcttatagcttatatatctcaaagcaagcacaaacatgtat |
48923297 |
T |
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| Q |
482 |
g-----------cagaagttttggacattgctaattatcgatacctagttcctatgtaaagtcacatcaaaattgttcttccttctcatgtttgcagaac |
570 |
Q |
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| T |
48923296 |
gtttctacctagcagaagctttggacattgctaattatcgatacctagttcctatgtaaagtcacatcaaaattgttcttccttctcatgtttgcagaac |
48923197 |
T |
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| Q |
571 |
gaagcctccctc |
582 |
Q |
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| T |
48923196 |
gaagcctccctc |
48923185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 48875605 - 48875688
Alignment:
| Q |
354 |
gcctatctcacaatcttccctgatccactcacactcattgaaatgcttaatatttccttccactttcatacgtttcgaatcatt |
437 |
Q |
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| T |
48875605 |
gcctatttcacaatgcaccctgatccacgcacactcgttgaaatgcttggtatcttcttccactttcatatgcttcgaaacatt |
48875688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 48912321 - 48912272
Alignment:
| Q |
19 |
acattgcaaagggatgctcctcctaatcagctctcgccaagttaccctga |
68 |
Q |
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| T |
48912321 |
acattgcaaagggatgctccttctagtcagctttcaccaaattaccctga |
48912272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 13599883 - 13599932
Alignment:
| Q |
16 |
ggaacattgcaaagggatgctcctcctaatcagctctcgccaagttaccc |
65 |
Q |
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| T |
13599883 |
ggaacattgcaaagggatgctcctcctaaccgcctctcgccaaattaccc |
13599932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 9573867 - 9573919
Alignment:
| Q |
370 |
tccctgatccactcacactcattgaaatgcttaatatttccttccactttcata |
423 |
Q |
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| T |
9573867 |
tccctgatccactcaccc-cattgaaatgctgaatattttcttccactttcata |
9573919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Original strand, 9582959 - 9583006
Alignment:
| Q |
388 |
tcattgaaatgcttaatatttccttccactttcatacgtttcgaatca |
435 |
Q |
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| T |
9582959 |
tcattgaaatgctgaatattttcttccactttcataagcttcgaatca |
9583006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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