View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16530_low_2 (Length: 534)
Name: NF16530_low_2
Description: NF16530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16530_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 15 - 518
Target Start/End: Original strand, 47593369 - 47593873
Alignment:
| Q |
15 |
cagagagcaggtgcaacaggaaaaacaatcctatttggtttacattagttgcttcagaagaccagtaagtaacctttctaaatgcaatctctgttcattg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47593369 |
cagagagcaggtgcaacaggaaaaacaatcctatttggtttacattagttgcttcagaagaccagtaagtaacctttctatatgcaatctctgttcattg |
47593468 |
T |
|
| Q |
115 |
nnnnnnn-ctatggaccctgaagcgttgcattgaccttgttattcaggaatggagaagtttccttgccacagatctcggcttgctacttaagaataaagt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47593469 |
ttttttttctatggaccctgaagcgttgcattgaccttgttattcaggaatggagaagtttccttgccacagatctcggcttgctacttaagaataaagt |
47593568 |
T |
|
| Q |
214 |
aactttttcaactcacaatgtctttctacttgtctttttcattcccctcatgnnnnnnnctttcttgagtatgcaatttagcaagcaacatggcctgtga |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47593569 |
aactttttcaactcacaatgtctttctacttgtctttttcattcccctcatgtttttttctttcttgagtatgcaatttagcaagcaacatggcctgtga |
47593668 |
T |
|
| Q |
314 |
atcgacacaacggaattccccactttttagtttgtgccaaaaattataaaatgatnnnnnnntgtgattttgtgtgcttatttataatttcataatagaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
47593669 |
atcgacacaacggaattccccactttttagtttgtgccaaaaattataaaatgataaaaaaatgtgattttgtgtgcttatttataatttcataaaagaa |
47593768 |
T |
|
| Q |
414 |
cttcaaaatctgtatggctaaataataactactttaggtaggccaaaatttaagtttccaaggagtaaatagtaacgggaaggtaaaacaaaaatactgt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47593769 |
cttcaaaatctgtatggctaaataataactactttaggtaggccaaaatttaagtttccaaggagtaaatagtaacgggaaggtaaaacaaaaatactgt |
47593868 |
T |
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| Q |
514 |
ttatg |
518 |
Q |
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| T |
47593869 |
ttatg |
47593873 |
T |
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