View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16530_low_3 (Length: 381)
Name: NF16530_low_3
Description: NF16530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16530_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 167 - 359
Target Start/End: Original strand, 30758211 - 30758423
Alignment:
| Q |
167 |
ctgataccatattataaatgatagaaataatatgtaattgcttgatgaatcagaaagttcaacaactatttataggtagttgatg--------------- |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
30758211 |
ctgataccatattataaatgatagaaataatatgtaattgcttgatgaatcagagagtacaacaactatttataggtagttgatgctgtacaatacatat |
30758310 |
T |
|
| Q |
252 |
-----actagcatcagtatattaaagctactactaatgtaagctaagttgcttgtggtctaagctaactaaatcactcttattatgtaatataaagaaat |
346 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| |
|
|
| T |
30758311 |
gatggactagcatcagcatattaaagctactactaaggtaagctaagttgcttgtggtctaagctatctaaaccactcttattatgtaatataaataaat |
30758410 |
T |
|
| Q |
347 |
ccggaattattaa |
359 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
30758411 |
cctgaattattaa |
30758423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 167 - 359
Target Start/End: Original strand, 30765663 - 30765875
Alignment:
| Q |
167 |
ctgataccatattataaatgatagaaataatatgtaattgcttgatgaatcagaaagttcaacaactatttataggtagttgatg--------------- |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
30765663 |
ctgataccatattataaatgatagaaataatatgtaattgcttgatgaatcagagagtacaacaactatttataggtagttgatgctgtacaatacatat |
30765762 |
T |
|
| Q |
252 |
-----actagcatcagtatattaaagctactactaatgtaagctaagttgcttgtggtctaagctaactaaatcactcttattatgtaatataaagaaat |
346 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| |
|
|
| T |
30765763 |
gatggactagcatcagcatattaaagctactactaaggtaagctaagttgcttgtggtctaagctatctaaaccactcttattatgtaatataaataaat |
30765862 |
T |
|
| Q |
347 |
ccggaattattaa |
359 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
30765863 |
cctgaattattaa |
30765875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 30758062 - 30758132
Alignment:
| Q |
18 |
attccaaatcagaggaagaagatgaagatcttcgtaagaaagaaatgcagagaagcaatgcgcaaagcttg |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
30758062 |
attccaaatcagaggaagaagatgaagatcttcgtaagaaataaatgcagagaagcaatacgcaaagcttg |
30758132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 30765514 - 30765584
Alignment:
| Q |
18 |
attccaaatcagaggaagaagatgaagatcttcgtaagaaagaaatgcagagaagcaatgcgcaaagcttg |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
30765514 |
attccaaatcagaggaagaagatgaagatcttcgtaagaaataaatgcagagaagcaatacgcaaagcttg |
30765584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University