View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16530_low_4 (Length: 366)
Name: NF16530_low_4
Description: NF16530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16530_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 31089060 - 31088715
Alignment:
| Q |
1 |
ctgatgttacaagaagatactttacatttttaagtggtgtatatggaacctcaaataaaatgatttcggcattgatcaacttcaatgatggttcaattca |
100 |
Q |
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| T |
31089060 |
ctgatgttacaataagatactttacatttttaagtggtgtatatggaacctcaaataaaatgatttcggcattgatcaacttcaatgatggttcaattca |
31088961 |
T |
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| Q |
101 |
atgtaccgtaggactctataaccgttctctgtgtaacaattgtagttttccaatcctccaattcgggacacccagagataagtttcatgaaatcctcccc |
200 |
Q |
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| T |
31088960 |
atgtaccgtaggactctataaccgttctgtgtgtaacaattgtagttttccaatcctccaattcgggacacccagagataagtttcatgaaatccttccc |
31088861 |
T |
|
| Q |
201 |
aacttcgaaataaatattaaacaatggtagagttttgagcaaaggaagatctacaaaacaatgaaacacaagtgttttgcaacagaaaatggtggaaggc |
300 |
Q |
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| T |
31088860 |
aacttcgaaataaatattaaacaattgtagagttttgagcataggaagatctacataacaatgaaacacaagtgttttgcaacagaaaatggtggaaggc |
31088761 |
T |
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| Q |
301 |
gccaaatggacgttaaccaagtatatataaagatcctctatgtgac |
346 |
Q |
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| T |
31088760 |
accaaatggacgttaaccaagtatatataaagatcctctatgtgac |
31088715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 138 - 268
Target Start/End: Complemental strand, 31114952 - 31114822
Alignment:
| Q |
138 |
aattgtagttttccaatcctccaattcgggacacccagagataagtttcatgaaatcctccccaacttcgaaataaatattaaacaatggtagagttttg |
237 |
Q |
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| T |
31114952 |
aattgtaggttttcaatactccaattcaggacacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttg |
31114853 |
T |
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| Q |
238 |
agcaaaggaagatctacaaaacaatgaaaca |
268 |
Q |
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| T |
31114852 |
agaaaaggaagttcaacagaacaatgaaaca |
31114822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 31115035 - 31115001
Alignment:
| Q |
46 |
gaacctcaaataaaatgatttcggcattgatcaac |
80 |
Q |
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| T |
31115035 |
gaacctcaaataaaatgatttcggccttgatcaac |
31115001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 19805827 - 19805702
Alignment:
| Q |
143 |
tagttttccaatcctccaattcgggacacccagagataagtttcatgaaatcctccccaacttcgaaataaatattaaacaatggtagagttttgagcaa |
242 |
Q |
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|||||||| ||| ||||||| |||||||||||| | |||||||||||||||||| | ||| |||| ||||||||||| | ||| ||||| ||||| |
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| T |
19805827 |
tagttttcaaattctccaatatgggacacccagaaagaagtttcatgaaatcctcgatattttccaaatgaatattaaacatagttagggttttcagcaa |
19805728 |
T |
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| Q |
243 |
aggaagatctacaaaacaatgaaaca |
268 |
Q |
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||||||||| ||| ||| |||||||| |
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| T |
19805727 |
aggaagatcaacagaaccatgaaaca |
19805702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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