View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16531_high_3 (Length: 267)

Name: NF16531_high_3
Description: NF16531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16531_high_3
NF16531_high_3
[»] chr2 (6 HSPs)
chr2 (85-253)||(32357129-32357298)
chr2 (11-80)||(23197430-23197499)
chr2 (11-80)||(23623034-23623103)
chr2 (19-80)||(22641861-22641922)
chr2 (11-80)||(24920037-24920106)
chr2 (16-80)||(23810584-23810648)
[»] scaffold0303 (1 HSPs)
scaffold0303 (11-80)||(14847-14916)
[»] chr7 (4 HSPs)
chr7 (11-80)||(18168208-18168277)
chr7 (25-80)||(14339233-14339288)
chr7 (16-80)||(14163759-14163823)
chr7 (28-68)||(18463067-18463107)
[»] chr6 (2 HSPs)
chr6 (11-80)||(19031755-19031824)
chr6 (28-68)||(13780792-13780832)
[»] chr3 (6 HSPs)
chr3 (11-80)||(10156466-10156535)
chr3 (25-80)||(7362021-7362076)
chr3 (25-80)||(14690018-14690073)
chr3 (19-80)||(10785713-10785774)
chr3 (36-80)||(13032692-13032736)
chr3 (34-80)||(12028980-12029026)
[»] scaffold0241 (1 HSPs)
scaffold0241 (11-80)||(15001-15070)
[»] scaffold0040 (1 HSPs)
scaffold0040 (11-80)||(34515-34584)
[»] scaffold0016 (1 HSPs)
scaffold0016 (11-80)||(129119-129188)
[»] chr5 (2 HSPs)
chr5 (11-80)||(21514540-21514609)
chr5 (28-80)||(24666443-24666495)
[»] scaffold0304 (1 HSPs)
scaffold0304 (16-80)||(19611-19675)
[»] scaffold0108 (1 HSPs)
scaffold0108 (16-80)||(35760-35824)
[»] scaffold0022 (1 HSPs)
scaffold0022 (16-80)||(27156-27220)
[»] chr4 (3 HSPs)
chr4 (16-80)||(13285952-13286016)
chr4 (16-80)||(15150482-15150546)
chr4 (11-80)||(14743553-14743622)
[»] scaffold0897 (1 HSPs)
scaffold0897 (11-80)||(872-940)
[»] scaffold0064 (1 HSPs)
scaffold0064 (16-80)||(34231-34295)
[»] scaffold0023 (3 HSPs)
scaffold0023 (25-80)||(67691-67746)
scaffold0023 (25-80)||(76869-76924)
scaffold0023 (28-80)||(7053-7105)
[»] scaffold0107 (3 HSPs)
scaffold0107 (11-80)||(15938-16007)
scaffold0107 (11-80)||(22550-22619)
scaffold0107 (11-78)||(7682-7749)
[»] chr1 (4 HSPs)
chr1 (11-80)||(22801367-22801436)
chr1 (36-80)||(22690810-22690854)
chr1 (25-80)||(41376973-41377028)
chr1 (34-80)||(21297504-21297550)
[»] chr8 (2 HSPs)
chr8 (11-74)||(22340175-22340238)
chr8 (28-80)||(22712518-22712570)
[»] scaffold0001 (2 HSPs)
scaffold0001 (34-80)||(123360-123406)
scaffold0001 (34-80)||(94551-94597)
[»] scaffold1900 (1 HSPs)
scaffold1900 (11-80)||(995-1064)
[»] scaffold0051 (1 HSPs)
scaffold0051 (11-80)||(72975-73044)
[»] scaffold0026 (1 HSPs)
scaffold0026 (11-80)||(135630-135699)
[»] scaffold0046 (1 HSPs)
scaffold0046 (40-80)||(56404-56444)
[»] scaffold0053 (1 HSPs)
scaffold0053 (19-68)||(35285-35334)
[»] scaffold0100 (1 HSPs)
scaffold0100 (16-80)||(2535-2599)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 85 - 253
Target Start/End: Complemental strand, 32357298 - 32357129
Alignment:
Q  85 gtcaaataacattgatgaatgaatattattgacnnnnnnnn-tggttgtacctaaagaaaaaggaattggaccccattacatgttagtgtgtgcaatggt 183  Q
    ||||||| |||||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32357298 gtcaaatgacattgatgaatgaatattattgacaaaaaaaaatggttttacctaaagaaaaaggaattggaccccattacatgttagtgtgtgcaatggt 32357199  T
Q  184 ggagacctaaacttgaaaattaatttatcatattctttttcacaatggaaagtgggtgtcacctttcttt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32357198 ggagacctaaacttgaaaattaatttatcatattctttttcacaatggaaagtgggtgtcacctttcttt 32357129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 23197499 - 23197430
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23197499 gaacctgtggaacacaccaagcaggccataaaatgaaatggcttttatttcaacaagggttatattggcc 23197430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 23623103 - 23623034
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23623103 gaacctgcggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaaggcttatattggcc 23623034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 22641861 - 22641922
Alignment:
Q  19 ggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  22641861 ggaacacaccaagcaggccataaaatgaaatgacttttatttcgacaaggtttatattggcc 22641922  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 24920037 - 24920106
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| |||| ||| || ||||| || |||||||||||||||||||| | |||||||||||||||||||||    
T  24920037 gaacttgtgaaacacatcaagctggtcataaaatgaaatggcttttgtatcgacaagggttatattggcc 24920106  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 23810648 - 23810584
Alignment:
Q  16 tgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||||||| |||||||||| |||||||||||  |||| |||||||||||  ||||||||||    
T  23810648 tgtggaacgcacaaagcaggccacaaaatgaaatgctttttgtttcgacaaggcgtatattggcc 23810584  T

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Target: scaffold0303 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 14916 - 14847
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14916 gaacctgtggaacacaccaagcaggccataaaatgaaatggcttttatttcgacaaggtttatattggcc 14847  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 18168277 - 18168208
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18168277 gaacctgtggaacacaccaagcaggccataaaatgaaatggcttttatttcgacaaggtttatattggcc 18168208  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 14339288 - 14339233
Alignment:
Q  25 caccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||||||||| |||||||||||||| |||||| ||||||| || ||||||||    
T  14339288 caccaagcaggccacaaaatgaaatggctcttattttgacaaggtttgtattggcc 14339233  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 14163823 - 14163759
Alignment:
Q  16 tgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||| || || ||||| ||||||||||| ||| | |||||||||| |||| ||||||||||    
T  14163823 tgtggaacacatcatgcaggtcataaaatgaagtggttgttatttcgacgaggggtatattggcc 14163759  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 18463067 - 18463107
Alignment:
Q  28 caagcaggccataaaatgaaatggcttttatttcgacaagg 68  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  18463067 caagcagaccacaaaatgaaatggcttttattttgacaagg 18463107  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 19031824 - 19031755
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19031824 gaacttgtggaacgcaccaagcgggccataaaatgaaatggcttttatttcgacaagggttatattggcc 19031755  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 13780792 - 13780832
Alignment:
Q  28 caagcaggccataaaatgaaatggcttttatttcgacaagg 68  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  13780792 caagcaggccacaaaatgaaatggcttttgtttcgacaagg 13780832  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 10156466 - 10156535
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10156466 gaacttgtggaacgcaccaagcgggccataaaatgaaatggcttttatttcgacaagggttatattggcc 10156535  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 7362076 - 7362021
Alignment:
Q  25 caccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||||||||| |||||||||||||| |||||||||||||| || ||||||||    
T  7362076 caccaagcaggccacaaaatgaaatggctcttatttcgacaaggtttgtattggcc 7362021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 14690073 - 14690018
Alignment:
Q  25 caccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||||||||| |||||||||||||| |||||||||||||| || ||||||||    
T  14690073 caccaagcaggccacaaaatgaaatggctcttatttcgacaaggcttgtattggcc 14690018  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 10785713 - 10785774
Alignment:
Q  19 ggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||| ||||| |||||||| || ||||||||||| || ||||||||||| |||||||||||    
T  10785713 ggaacacaccaggcaggccacaagatgaaatggctcttgtttcgacaaggcttatattggcc 10785774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 13032692 - 13032736
Alignment:
Q  36 ccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||    
T  13032692 ccataaaatgaaatggcttttgtttcgacaaggtgtatattggcc 13032736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 12029026 - 12028980
Alignment:
Q  34 ggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||| | |||||||||||  ||||||||||    
T  12029026 ggccataaaatgaaatggcttctgtttcgacaaggcgtatattggcc 12028980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 15001 - 15070
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  15001 gaacttgtggaacgcaccaagctggccataaaatgaaatggcttttgtttcgacaagggttatattggcc 15070  T

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Target: scaffold0040 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 34515 - 34584
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34515 gaacttgtggaacacaccaagcgggccataaaatgaaatggcttttatttcgacaagggttatattggcc 34584  T

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Target: scaffold0016 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 129188 - 129119
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  129188 gaacctgcggaacacaccaagcaggccataaaatgaaatggcttttatttcgacaaggtttatattggcc 129119  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 21514540 - 21514609
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  21514540 gaacttgtggaacgcaccaagcgggccataaaatgaaatggcttttgtttcgacaagggttatattggcc 21514609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 24666495 - 24666443
Alignment:
Q  28 caagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||| ||||||||||||||| |  || ||||||||||||| ||||||||    
T  24666495 caagcaggtcataaaatgaaatggttaatacttcgacaagggttgtattggcc 24666443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 19675 - 19611
Alignment:
Q  16 tgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  19675 tgtggaacgcaccaagcaggccacaaaatgaaatggcttttatttcgacaaggtttatattggcc 19611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 35760 - 35824
Alignment:
Q  16 tgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  35760 tgtggaacgcaccaagcaggccacaaaatgaaatggcttttatttcgacaaggtttatattggcc 35824  T

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Target: scaffold0022 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 27156 - 27220
Alignment:
Q  16 tgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  27156 tgtggaacgcaccaagcaggccataaaatgaaatggcttttattccaacaagggttatattggcc 27220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 13286016 - 13285952
Alignment:
Q  16 tgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  13286016 tgtggaacgcaccaagcaggccataaaataaaatggcttttatttcgacaaggtttatattggcc 13285952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 15150546 - 15150482
Alignment:
Q  16 tgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  15150546 tgtggaacgcaccaagcaggccacaaaatgaaatggcttttatttcgacaaggtttatattggcc 15150482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 14743622 - 14743553
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||| ||||||||||    
T  14743622 gaacttgtggaacacatcaagctggtcataaaatgaaatggcttttgtttcgacaagggctatattggcc 14743553  T

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Target: scaffold0897 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0897
Description:

Target: scaffold0897; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 940 - 872
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  940 gaacctgtggaacacaccaagcaggccataaaatgaaatggc-tttatttcgacaaggtttatattggcc 872  T

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Target: scaffold0064 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 34295 - 34231
Alignment:
Q  16 tgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||||||||    
T  34295 tgtggaacgcaccaagcaggccacaaaatgaaatagcttttattttgacaaggtttatattggcc 34231  T

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Target: scaffold0023 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 67691 - 67746
Alignment:
Q  25 caccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  67691 caccaagctggccataaaatgaaatggcttttgtttcgacaagggttatattggcc 67746  T

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Target: scaffold0023; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 76869 - 76924
Alignment:
Q  25 caccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  76869 caccaagctggccataaaatgaaatggcttttgtttcgacaagggttatattggcc 76924  T

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Target: scaffold0023; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 7053 - 7105
Alignment:
Q  28 caagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  7053 caagctggccataaaatgaaatggcttttgtttcgacaagggttgtattggcc 7105  T

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Target: scaffold0107 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 15938 - 16007
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  15938 gaacttgtggaacacatcaagctggtcataaaatgaaatggcttttgtttcgacaagggttatattggcc 16007  T

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Target: scaffold0107; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 22550 - 22619
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  22550 gaacttgtggaacacatcaagctggtcataaaatgaaatggcttttgtttcgacaagggttatattggcc 22619  T

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Target: scaffold0107; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 7682 - 7749
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattgg 78  Q
    |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  7682 gaacttgtggaacacatcaagctggtcataaaatgaaatggcttttttttcgacaagggttatattgg 7749  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 22801436 - 22801367
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  22801436 gaacttgtggaacacatcaagctggtcataaaatgaaatggcttttgtttcgacaagggttatattggcc 22801367  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 22690854 - 22690810
Alignment:
Q  36 ccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||    
T  22690854 ccataaaatgaaatggcttttgtttcgacaagggttgtattggcc 22690810  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 41377028 - 41376973
Alignment:
Q  25 caccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||||||||| || ||||||||||| || ||||||||||| |||||||||||    
T  41377028 caccaagcaggccacaagatgaaatggctcttgtttcgacaaggcttatattggcc 41376973  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 21297504 - 21297550
Alignment:
Q  34 ggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||||||||||| |||||| |||| ||||||||| ||||||||    
T  21297504 ggccataaaatgaaatagcttttgtttcaacaagggttgtattggcc 21297550  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 22340238 - 22340175
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttata 74  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  22340238 gaacttgtggaacacaccaagctggccataaaatgaaatggcttttgtttcgacaagggctata 22340175  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 22712518 - 22712570
Alignment:
Q  28 caagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||| ||||||||||||||| |  ||||||||||||| || ||||||||    
T  22712518 caagcaggtcataaaatgaaatggttaatatttcgacaaggtttgtattggcc 22712570  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 123406 - 123360
Alignment:
Q  34 ggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  123406 ggccataaaatgaaatggcttttgtttcgacaagggttatattggcc 123360  T

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Target: scaffold0001; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 94551 - 94597
Alignment:
Q  34 ggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  94551 ggccataaaatgaaatggcttttgtttcgacaagggttgtattggcc 94597  T

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Target: scaffold1900 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1900
Description:

Target: scaffold1900; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 1064 - 995
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| |||||||| || ||||| || |||||||| ||||||||||| |||||||||||||||||||||||    
T  1064 gaacttgtggaacacatcaagctggtcataaaataaaatggcttttgtttcgacaagggttatattggcc 995  T

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Target: scaffold0051 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 72975 - 73044
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||| ||||| ||||| |||||||| |||||||||||||| || ||||||||||| |||||||||||    
T  72975 gaacctgcggaacacaccaggcaggccacaaaatgaaatggctcttgtttcgacaaggtttatattggcc 73044  T

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Target: scaffold0026 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 135699 - 135630
Alignment:
Q  11 gaacctgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||| ||||||||  | ||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  135699 gaacttgtggaacaaatcaagctggtcataaaatgaaatggcttttgtttcgacaagggttatattggcc 135630  T

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Target: scaffold0046 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 56404 - 56444
Alignment:
Q  40 aaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  56404 aaaatgaaatggcttttgtttcgacaagggttgtattggcc 56444  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 35334 - 35285
Alignment:
Q  19 ggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagg 68  Q
    |||||||| || || | ||||||||||||||||||||| |||||||||||    
T  35334 ggaacgcatcaggccgaccataaaatgaaatggcttttgtttcgacaagg 35285  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 2535 - 2599
Alignment:
Q  16 tgtggaacgcaccaagcaggccataaaatgaaatggcttttatttcgacaagggttatattggcc 80  Q
    |||||||| || ||||||  ||| ||||||||||||||||| || ||||||||  ||||||||||    
T  2535 tgtggaacacatcaagcaaaccacaaaatgaaatggcttttgttccgacaaggcgtatattggcc 2599  T

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