View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16531_low_1 (Length: 595)

Name: NF16531_low_1
Description: NF16531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16531_low_1
NF16531_low_1
[»] scaffold0063 (2 HSPs)
scaffold0063 (20-264)||(54280-54528)
scaffold0063 (457-594)||(54108-54245)
[»] chr8 (1 HSPs)
chr8 (302-344)||(33124587-33124629)
[»] scaffold0019 (1 HSPs)
scaffold0019 (301-344)||(66449-66492)
[»] chr7 (1 HSPs)
chr7 (301-340)||(22744650-22744689)
[»] chr6 (3 HSPs)
chr6 (301-339)||(7729505-7729543)
chr6 (310-340)||(11633972-11634002)
chr6 (311-340)||(11616235-11616264)
[»] chr3 (4 HSPs)
chr3 (310-340)||(40614484-40614514)
chr3 (311-340)||(26966550-26966579)
chr3 (301-337)||(49334927-49334963)
chr3 (301-337)||(49340116-49340152)
[»] chr2 (1 HSPs)
chr2 (302-343)||(15406338-15406379)


Alignment Details
Target: scaffold0063 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 54528 - 54280
Alignment:
Q  20 actcgtagaaagggactaagggg-agtactt---tccaagttggtggtgtaatttgatgataatttcttcttcttcgcttgtgtagttcccatgtttaag 115  Q
    ||||||| ||||||||||||||| |||||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  54528 actcgtaaaaagggactaagggggagtacttatttccaagttggtagtgtaatttgatgataatttcttcttcttcgcttgtgtagttcccatgttttag 54429  T
Q  116 atttggctttaagtaattcaaccaacgaagtctgcaactttttccacaccttaataaacctgtaataaaacagcaatgattgaaatatatatttacattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  54428 atttggctttaagtaattcaaccaacgaagtctgcaactttttccacaccttaataaacctgtaataaaacagcactgactgaaatatatatttacattt 54329  T
Q  216 cttactcttaatcctaaattaatgaagcttaatatgtatttttaggcag 264  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  54328 cttactcttaatcctaaattaatgaagcttaaattgtatttttaggcag 54280  T

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Target: scaffold0063; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 457 - 594
Target Start/End: Complemental strand, 54245 - 54108
Alignment:
Q  457 ttgatcattaacattaatcatgaatattaattaaatacagaatgaaacatgtacctgcaagcttggggagttgacgccaattagaatgaccatgcttctg 556  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  54245 ttgatcattaacattaatcgtaaatattaattaaatactgaatgaaacatatacctgcaagcttggggagttgacgccaatttgaatgaccatgtttctg 54146  T
Q  557 aatataatcacttaaccttgtatcctcatctctgctcc 594  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  54145 aatataatcacttaaccttgtatcctcatctctactcc 54108  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 33124587 - 33124629
Alignment:
Q  302 attgattgcacaattttcaatgcaataactactatataacttc 344  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  33124587 attgattacacaattttcaatgcaataactactatataacttc 33124629  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 66492 - 66449
Alignment:
Q  301 gattgattgcacaattttcaatgcaataactactatataacttc 344  Q
    |||| ||| ||||||||||||||||||||||| |||||||||||    
T  66492 gattaattacacaattttcaatgcaataactattatataacttc 66449  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 22744689 - 22744650
Alignment:
Q  301 gattgattgcacaattttcaatgcaataactactatataa 340  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  22744689 gattgattacacaatttttaatgcaataactactatataa 22744650  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 7729505 - 7729543
Alignment:
Q  301 gattgattgcacaattttcaatgcaataactactatata 339  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  7729505 gattgattacacaattttcaatgcaataacaactatata 7729543  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 340
Target Start/End: Complemental strand, 11634002 - 11633972
Alignment:
Q  310 cacaattttcaatgcaataactactatataa 340  Q
    |||||||||||||||||||||||||||||||    
T  11634002 cacaattttcaatgcaataactactatataa 11633972  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 340
Target Start/End: Original strand, 11616235 - 11616264
Alignment:
Q  311 acaattttcaatgcaataactactatataa 340  Q
    ||||||||||||||||||||||||||||||    
T  11616235 acaattttcaatgcaataactactatataa 11616264  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 340
Target Start/End: Complemental strand, 40614514 - 40614484
Alignment:
Q  310 cacaattttcaatgcaataactactatataa 340  Q
    |||||||||||||||||||||||||||||||    
T  40614514 cacaattttcaatgcaataactactatataa 40614484  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 340
Target Start/End: Complemental strand, 26966579 - 26966550
Alignment:
Q  311 acaattttcaatgcaataactactatataa 340  Q
    ||||||||||||||||||||||||||||||    
T  26966579 acaattttcaatgcaataactactatataa 26966550  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 49334963 - 49334927
Alignment:
Q  301 gattgattgcacaattttcaatgcaataactactata 337  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  49334963 gattaattacacaattttcaatgcaataactactata 49334927  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 49340152 - 49340116
Alignment:
Q  301 gattgattgcacaattttcaatgcaataactactata 337  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  49340152 gattaattacacaattttcaatgcaataactactata 49340116  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 15406338 - 15406379
Alignment:
Q  302 attgattgcacaattttcaatgcaataactactatataactt 343  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  15406338 attgattacataattttcaatgcaataattactatataactt 15406379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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