View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16531_low_2 (Length: 587)
Name: NF16531_low_2
Description: NF16531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16531_low_2 |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: scaffold1301 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 265 - 571
Target Start/End: Complemental strand, 613 - 307
Alignment:
| Q |
265 |
acaaacaaacaaaacaagtaatcaagagttttgtgtcagaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgt |
364 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |||| | |
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| T |
613 |
acaaacaaacaaagcaagtaatggagagttttgtgtcagaaacagccctctcaacttgtgtgaaagtgttgttaaacaagattgtttctagtgagttcat |
514 |
T |
|
| Q |
365 |
gaacaactacaggaggatgaagcttcacaattcacatttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttagc |
464 |
Q |
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| ||| |||||||| || ||| ||| ||| | ||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
513 |
ggacacctacaggaagacgaatcttgacattccactcttggaaaagctccagacagaactgctcaattttgaagttgtacctaatgatgatgctgttagc |
414 |
T |
|
| Q |
465 |
gtacatgtatggttgaataggctcaaaaatgctgtctcgaatgttaactatttgtttggtgatataaagtatgcgttgcgctgcaaagttgatgcacggt |
564 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| |
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| T |
413 |
gtacatgtatggttgaacaggctcaaaaatgctgtctcgaatgttaactatttgtttggttatataaagtatgcgttgcgctgcaaacttgaagcacggt |
314 |
T |
|
| Q |
565 |
atgaaac |
571 |
Q |
| |
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||||||| |
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| T |
313 |
atgaaac |
307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 35760175 - 35760380
Alignment:
| Q |
33 |
ttcttatatgatataatatcacatatataata--cctagataacaaaacttatatcctcagctacttttacaaaactggccctttagcagattcatatga |
130 |
Q |
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| T |
35760175 |
ttcttatatgatataatatcacatatataatatacctagata-caaaatttatatcctcggctactttcacaaaactgaccctttagcagcttcatagga |
35760273 |
T |
|
| Q |
131 |
gtcctttcttgcagtccaaggaatctgatcttcaattataccatggactatgagtagccaccttgtctgcataagcaaaatttcccctccttcctacacc |
230 |
Q |
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|||||| | |||||||||||| ||||||||| | ||||||| || | ||||||| ||||| || |||||| ||||||||||||||||||| | || |
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| T |
35760274 |
gtccttgcatgcagtccaaggcccttgatcttca--tttaccatgcaccaggagtagctaccttttccacataagaaaaatttcccctccttcctcctcc |
35760371 |
T |
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| Q |
231 |
tcttcctcc |
239 |
Q |
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||||||||| |
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| T |
35760372 |
tcttcctcc |
35760380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 39 - 238
Target Start/End: Original strand, 35785189 - 35785389
Alignment:
| Q |
39 |
tatgatataatatcacatatataatac---ctagataacaaaacttatatcctcagctacttttacaaaactggccctttagcagattcatatgagtcct |
135 |
Q |
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|||||||||||||||||||||||||| |||||||| || ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| | |
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| T |
35785189 |
tatgatataatatcacatatataataataactagataataatacttatatcctcagccactttgacaaaactgaccctttagcagattcatatgagtctt |
35785288 |
T |
|
| Q |
136 |
ttcttgcagtccaaggaatctgatcttcaattataccatggactatgagtagccaccttgtctgcataagcaaaatttcccctccttcctacacctcttc |
235 |
Q |
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| T |
35785289 |
tgcttgcagtacaaggtatttgatcttca--tttaccatgcagtaggagtagctaccttgtgcacatagttaaaatttcccctcattcctcctcctcttc |
35785386 |
T |
|
| Q |
236 |
ctc |
238 |
Q |
| |
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||| |
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| T |
35785387 |
ctc |
35785389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 35765771 - 35765883
Alignment:
| Q |
124 |
catatgagtcctttcttgcagtccaaggaatctgatcttcaattataccatggactatgagtagccaccttgtctgcataagcaaaatttcccctccttc |
223 |
Q |
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|||| ||||||||||||||||||||| | |||||||||||| ||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
35765771 |
cataggagtcctttcttgcagtccaaagcatctgatcttcattta--ccatgcactaggagtagttaccttgtctgcataagcaaaatttcccctccttc |
35765868 |
T |
|
| Q |
224 |
ctacacctcttcctc |
238 |
Q |
| |
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|| |||||||||||| |
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| T |
35765869 |
ctccacctcttcctc |
35765883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 35798635 - 35798739
Alignment:
| Q |
43 |
atataatatcacatatataatacctagataacaaaacttatatcctcagctacttttacaaaactggccctttagcagattcatatgagtcctttcttgc |
142 |
Q |
| |
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|||||| ||||||||||||||||||||| |||| |||||||||||| | ||||| ||||||||| |||| |||||| |||||| | |||||| ||||| |
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| T |
35798635 |
atataacatcacatatataatacctagaaaacataacttatatcct-gccaactttcacaaaactgaccctctagcagcttcataggcgtccttgcttgc |
35798733 |
T |
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| Q |
143 |
agtcca |
148 |
Q |
| |
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| |||| |
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| T |
35798734 |
actcca |
35798739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 35755055 - 35755146
Alignment:
| Q |
33 |
ttcttatatgatataatatcacatatataataccta----gataacaaaacttatatcctcagctacttttacaaaactggccctttagcag |
120 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||| | | |||||||||||||||||||| ||||||| ||||||| |||| || ||||| |
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| T |
35755055 |
ttcttatatgatgtaatatcacatatataacaccaaccaagttaacaaaacttatatcctcaactactttcacaaaacaggcctttcagcag |
35755146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 265 - 483
Target Start/End: Original strand, 17310953 - 17311171
Alignment:
| Q |
265 |
acaaacaaacaaaacaagtaatcaagagttttgtgtcagaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgt |
364 |
Q |
| |
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||||||||||||| |||||||| | || |||||| ||||||| |||||||||||| || ||||| | |||||||||||||||||||| | |||||| |
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| T |
17310953 |
acaaacaaacaaagcaagtaatggaaggtattgtgttagaaacactcctctcaacttgcgtcaaagtcatgttaaacaagattgtttctagtgagttcgt |
17311052 |
T |
|
| Q |
365 |
gaacaactacaggaggatgaagcttcacaattcacatttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttagc |
464 |
Q |
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| ||||||||||||||| ||||||| | ||| | |||||||| ||| ||||||| ||||||||||||||||||||| ||| |||||||||||||| |
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| T |
17311053 |
ggacaactacaggaggacgaagcttgatgtttcgctcttggaaaatctcaagacagaactgctcagttttgaagttgtagttaacgatgatgctgttagt |
17311152 |
T |
|
| Q |
465 |
gtacatgtatggttgaata |
483 |
Q |
| |
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|| ||||||||||||||| |
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| T |
17311153 |
gtcaatgtatggttgaata |
17311171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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