View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16531_low_4 (Length: 333)
Name: NF16531_low_4
Description: NF16531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16531_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 21057220 - 21056917
Alignment:
| Q |
21 |
atcagtcatatacactatgcaaaagaaataacaaaaatcaaatataaatatttagtttccaaaacgcaaaagttagtatacatgtcatcaagatacatac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21057220 |
atcagtcatatacactatgcaaaagaaataacaaaaatcaaatataaatatttagtttccaaaacgcaaaagttagtatacatgtcatcaagatacatac |
21057121 |
T |
|
| Q |
121 |
ataatagagtccttcagtgtatgtctttgaacttaattttattgctatttgataatcttctaagaagcaaacaataattgctatttagttgnnnnnnnnc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21057120 |
ataatagagtccttcagtgtatgtctttgaacttaattttattgctatttgataatcttctaagaagcaaacaataattgctatttagttg-aaaaagac |
21057022 |
T |
|
| Q |
221 |
acttaaagaactcaaagtcaagcaacatactcacaaaacccaccaaagtcaacaccgaatcagaagcacagtgaaaagaagtgaagcagtagctatattc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21057021 |
acttaaagaactcaaagtcaagcaacatactcacaaaacccaccaaagtcaacaccgaatcagaagcacagtgaaaagaagtgaagcagtagctatattc |
21056922 |
T |
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| Q |
321 |
atctc |
325 |
Q |
| |
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||||| |
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| T |
21056921 |
atctc |
21056917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 26364798 - 26365097
Alignment:
| Q |
21 |
atcagtcatatacactatgcaaaagaaataacaaaaatcaaatataaatatttagtttccaaaacgcaaaagttagtatacatgtcatcaagatacatac |
120 |
Q |
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|||||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
26364798 |
atcagtcatatacactatacaaaagaaagaacaaatatcaataataaatatttagtttccaaaacgcaaaagttaatat-----gcatcaagatacatac |
26364892 |
T |
|
| Q |
121 |
ataatagagtccttcagtgtatgtctttgaacttaattttattgctatttgataatcttctaagaagcaaacaataattgctatttagttgnnnnnnnnc |
220 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
26364893 |
ataatagagtccttcagtgtatgtctttgaacttcattttattgctatttgagaatcttctaagaagcaaacaataattgctatttagttg-aaaaatac |
26364991 |
T |
|
| Q |
221 |
acttaaagaactcaaagtcaagcaacatactcacaaaacccaccaaagtcaacaccgaatcagaagcacagtgaaaagaagtgaagcagtagct-atatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26364992 |
acttaaagaactcaaagtcaagcaacatactcacaaaacccatcaaagtcaacaccgaatcagaagcacagtgaaaagaagtgaagcagtagctaatatt |
26365091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 26363055 - 26363179
Alignment:
| Q |
21 |
atcagtcatatacactatgcaaaagaaataacaaaaatcaaatataaatatttagtttccaaaacgcaaaagttagtatacatgtcatcaagatacatac |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |
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| T |
26363055 |
atcagtcatatacactatacaaaagaaataacaaatatcaaatataaatattttgtttccaaaacgcaaaagttagtata-----catcaaaatacatac |
26363149 |
T |
|
| Q |
121 |
ataatagagtccttcagtgtatgtctttga |
150 |
Q |
| |
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|||||||||||||||||||||||| ||||| |
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| T |
26363150 |
ataatagagtccttcagtgtatgtatttga |
26363179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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