View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16531_low_7 (Length: 262)
Name: NF16531_low_7
Description: NF16531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16531_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 27002369 - 27002601
Alignment:
| Q |
12 |
cgaagaatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggtactcagattctcgacgaaaattactctttaggaaaatct |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | || |||||||| |||||||||||| |
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| T |
27002369 |
cgaaaaatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggttctcaaattctcaatgagaattactcattaggaaaatct |
27002468 |
T |
|
| Q |
112 |
ctcacaactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggttttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27002469 |
ctcacaactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggttttt |
27002568 |
T |
|
| Q |
212 |
gttcaagtaggtgtggaacccatggttcttctt |
244 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |
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| T |
27002569 |
gttcaagtaggtgtggaacacatggttcttctt |
27002601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 26721655 - 26721882
Alignment:
| Q |
17 |
aatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggtactcagattctcgacgaaaattactctttaggaaaatctctcac |
116 |
Q |
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|||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||||||||||||| |
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| T |
26721655 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcac |
26721754 |
T |
|
| Q |
117 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721755 |
aactaaccaaatccttaatctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
26721854 |
T |
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| Q |
217 |
agtaggtgtggaacccatggttcttctt |
244 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
26721855 |
agtaggtgtggaacccatggttcttctt |
26721882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 26991404 - 26991631
Alignment:
| Q |
17 |
aatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggtactcagattctcgacgaaaattactctttaggaaaatctctcac |
116 |
Q |
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|
|||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||||||||||||| |
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| T |
26991404 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcac |
26991503 |
T |
|
| Q |
117 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991504 |
aactaaccaaatccttaatctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
26991603 |
T |
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| Q |
217 |
agtaggtgtggaacccatggttcttctt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
26991604 |
agtaggtgtggaacccatggttcttctt |
26991631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 26996099 - 26996326
Alignment:
| Q |
17 |
aatattaccaactcgcgaacaataagaaatcagttaacctagctctctcactaggtactcagattctcgacgaaaattactctttaggaaaatctctcac |
116 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||| || ||||||||||||||||||||||| |
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| T |
26996099 |
aatattaccaactcactaacaacaagaaatcagttaacctagctctatcactaggtactcaaattttggacgagaaatactctttaggaaaatctctcac |
26996198 |
T |
|
| Q |
117 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26996199 |
aactaaccaaatccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggtttttgttca |
26996298 |
T |
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| Q |
217 |
agtaggtgtggaacccatggttcttctt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
26996299 |
agtaggtgtggaacccatggttcttctt |
26996326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 33821285 - 33821368
Alignment:
| Q |
159 |
aaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttcaagtaggtgtggaacccatggttcttc |
242 |
Q |
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|||||||||||||||||| || || | ||||| ||| ||||||| || |||||||| ||||| ||||| || ||||||||||| |
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| T |
33821285 |
aaacgccatcaacgttgttctcacttcggctgacgtggtagttgatgggttttgttccagtagatgtgggacacatggttcttc |
33821368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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