View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16532_high_2 (Length: 238)
Name: NF16532_high_2
Description: NF16532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16532_high_2 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 34729678 - 34729457
Alignment:
| Q |
17 |
actttgcaggtgtagaagatttcattaccgtttctgatacaaatgatgaacaagactttatttgtgctctctctcttctgtcaaccaatccatgggattc |
116 |
Q |
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| T |
34729678 |
actttgcaggtgtagaagatttcattaccgtttctgatacaaatgatgaacaagactttatttgtgctctctctcttctgtcaaccaatccatgggattc |
34729579 |
T |
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| Q |
117 |
atatgcgattaaatccatgtctctagaacattctaatcgtccaaccagtgctgttcaagccgtaacgcatccaatgagtcagcgcatgactcttgcttaa |
216 |
Q |
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| T |
34729578 |
atatgcgactaaatccatgtctctagaacattctaatcgtccaaccagtgctgttcaagctgtaactcatccaatgagtcagcgcatgcctcttgcttga |
34729479 |
T |
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| Q |
217 |
tcagaatcatggtcaacatgtc |
238 |
Q |
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| T |
34729478 |
tcagaatcatggtcaacatgtc |
34729457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 34725618 - 34725416
Alignment:
| Q |
20 |
ttgcaggtgtagaagatttcattaccgtttctgatacaaatgatgaacaagactttatttgtgctctctctcttctgtcaaccaatccatgggattcata |
119 |
Q |
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| T |
34725618 |
ttgcaggtgtagaagatttcatgaacttttctgatacaaatgctacacaagactttacttgtgctctctctcttctgtcaaccaatcagtgggattcata |
34725519 |
T |
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| Q |
120 |
tgcgattaaatccatgtctctagaacattctaatcgtccaaccagtgctgttcaagccgtaacgcatccaatgagtcagcgcatgactcttgcttaatca |
219 |
Q |
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| T |
34725518 |
tgcgactaaatccatttctcaagaacattctaatcgcccgaccagtccttttcaagccacaactcatgcaatgagtcagtgcattcctcttgcttcatca |
34725419 |
T |
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| Q |
220 |
gaa |
222 |
Q |
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| T |
34725418 |
gaa |
34725416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 38610216 - 38610060
Alignment:
| Q |
73 |
tttatttgtgctctctctcttctgtcaaccaatccatgggattcatatgcgattaaatccatgtctctagaacattctaatcgtccaaccagtgctgttc |
172 |
Q |
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|||| ||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
38610216 |
tttacttgtgctctttcacttctgtcaatcaatccgtgggattcatatgcgattaaatccatgtctctagaacattctaattgcccagccagtgctgttc |
38610117 |
T |
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| Q |
173 |
aagccgtaacgcatccaatgagtcagcgcatgactcttgcttaatcagaatcatggt |
229 |
Q |
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| T |
38610116 |
aagccttaactcatgcaatgagtctgcgcatgtctcctgcttcatcagaatcatggt |
38610060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 38795000 - 38794844
Alignment:
| Q |
73 |
tttatttgtgctctctctcttctgtcaaccaatccatgggattcatatgcgattaaatccatgtctctagaacattctaatcgtccaaccagtgctgttc |
172 |
Q |
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| T |
38795000 |
tttacttgtgctctttcacttctgtcaatcaatccgtgggattcatatgcgattaaatccatgtctctagaacattctaattgcccagccagtgctgttc |
38794901 |
T |
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| Q |
173 |
aagccgtaacgcatccaatgagtcagcgcatgactcttgcttaatcagaatcatggt |
229 |
Q |
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| T |
38794900 |
aagccttaactcatgcaatgagtcggcgcatgtctcctgcttcatcagaatcatggt |
38794844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 34720202 - 34720021
Alignment:
| Q |
19 |
tttgcaggtgtagaagatttcattaccgtttctgatacaaatgatgaacaagactttatttgtgctctctctcttctgtcaaccaatccatgggattcat |
118 |
Q |
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| T |
34720202 |
tttgcaggtgtagaagatttcattagcttctctgatacagatgctacggaagattttacttgtgcttcctctcttctgtcaaccagtccgtgggattcat |
34720103 |
T |
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| Q |
119 |
atgcgattaaatccatgtctctagaacattctaatcgtccaaccagtgctgttcaagccgtaacgcatccaatgagtcagcg |
200 |
Q |
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| T |
34720102 |
atgcaaccaaatccgtttctctagtacattctgatcgtacaaccagtactgctcaagccataacacacacaacgagtcagcg |
34720021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 33079622 - 33079572
Alignment:
| Q |
132 |
catgtctctagaacattctaatcgtccaaccagtgctgttcaagccgtaac |
182 |
Q |
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| T |
33079622 |
catgtctctagaacattctaattgcccaaccagtgatgttcaagccataac |
33079572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 38496516 - 38496557
Alignment:
| Q |
80 |
gtgctctctctcttctgtcaaccaatccatgggattcatatg |
121 |
Q |
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| T |
38496516 |
gtgctctctctcttctgtcaaccaattcatggggtgcatatg |
38496557 |
T |
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