View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16532_low_1 (Length: 575)
Name: NF16532_low_1
Description: NF16532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16532_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 40880094 - 40879689
Alignment:
| Q |
20 |
ctcggtaggtggtgtagtcggagttgtcaaaatgtttggtgaaaaagacactatcgggtggctcattgaaggtgaatgtggggggttcactctcatactt |
119 |
Q |
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| T |
40880094 |
ctcggtagggggtgtaggcggagttgtcaaaatgtttggtgaaaaagacactatcgggtggctcattgaaggtgaatgtggggggttcactctcatactt |
40879995 |
T |
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| Q |
120 |
gcttttggtgaaagacattgtgaaatggtgatgcagaagttgtgaggtatatatattggtggagtatacttacaaggattagtgggaaatgtgagggaca |
219 |
Q |
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| T |
40879994 |
gcttttggtgaaagacattgtgaaatggtgatgcagaagttgtgaggtgtatatattggtggagtatacttacaaggattagtgggaaatgtgagggaca |
40879895 |
T |
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| Q |
220 |
taacataagagtatacttacaagagagaaatgaaggagttgtgatgcatgaagagataggtgaagcagaagttgttgctttaatttcaataaatcttcta |
319 |
Q |
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| T |
40879894 |
taacataagagtatacttacaagagagaaatgaaggagttgtgatgcatgaagagataggtgaagcaaaagttgtcgc-----tttcaataaatcttcta |
40879800 |
T |
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| Q |
320 |
tgttggaacaagtttattgtttttagaataagaagaagtattaaagagaaaggagagaattcacttttggattgaaaggatcaagtttattcattccaat |
419 |
Q |
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| T |
40879799 |
tgttggaacaagtttattgtttttagaataagaagaagtattaaagagaaaggagagaattcacttttggattgaaaggatcaagtttattcattccaat |
40879700 |
T |
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| Q |
420 |
atattgtgaga |
430 |
Q |
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| T |
40879699 |
atattgtgaga |
40879689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 426 - 539
Target Start/End: Complemental strand, 40879635 - 40879521
Alignment:
| Q |
426 |
tgagaagtgtgataaaat-actccaagaggccaccaaattgtgaaagaggtgaaacatatataatcaatggagatccaaacaaaaacaataatatatttg |
524 |
Q |
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| T |
40879635 |
tgagaagtgtgataaaattactccaagaggccaccaaattgtgaaagaggtgaaacatatataatcaatggagatccaaacaaaaacaataatatatttg |
40879536 |
T |
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| Q |
525 |
tacacaaccgtggcc |
539 |
Q |
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| T |
40879535 |
tacacaaccgtggcc |
40879521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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