View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16532_low_2 (Length: 250)

Name: NF16532_low_2
Description: NF16532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16532_low_2
NF16532_low_2
[»] chr5 (9 HSPs)
chr5 (8-205)||(7766906-7767102)
chr5 (8-204)||(18696958-18697155)
chr5 (8-197)||(27169997-27170186)
chr5 (98-205)||(41355447-41355553)
chr5 (102-205)||(7271893-7271992)
chr5 (101-205)||(26656827-26656927)
chr5 (101-205)||(26928414-26928514)
chr5 (13-85)||(41355543-41355615)
chr5 (8-48)||(6030388-6030428)
[»] chr4 (6 HSPs)
chr4 (18-205)||(23054135-23054320)
chr4 (21-205)||(47518352-47518535)
chr4 (13-205)||(53202296-53202487)
chr4 (8-156)||(6410016-6410164)
chr4 (85-163)||(24957548-24957626)
chr4 (13-66)||(34227057-34227110)
[»] chr2 (8 HSPs)
chr2 (8-203)||(17375302-17375496)
chr2 (13-205)||(1895440-1895631)
chr2 (18-200)||(17281850-17282031)
chr2 (13-194)||(1551510-1551690)
chr2 (13-88)||(3921622-3921697)
chr2 (80-159)||(38531146-38531225)
chr2 (163-205)||(4140576-4140618)
chr2 (8-48)||(34660311-34660351)
[»] chr6 (3 HSPs)
chr6 (18-194)||(20740613-20740788)
chr6 (8-205)||(21881492-21881688)
chr6 (92-159)||(30845650-30845717)
[»] chr1 (8 HSPs)
chr1 (20-205)||(34118009-34118195)
chr1 (97-205)||(39708923-39709029)
chr1 (8-162)||(11407928-11408082)
chr1 (98-200)||(34655070-34655171)
chr1 (8-88)||(39709015-39709095)
chr1 (8-86)||(26236671-26236749)
chr1 (101-201)||(615823-615919)
chr1 (98-158)||(26236622-26236682)
[»] chr8 (3 HSPs)
chr8 (8-250)||(5994655-5994892)
chr8 (8-205)||(10408850-10409046)
chr8 (13-162)||(6444065-6444214)
[»] chr7 (1 HSPs)
chr7 (8-199)||(3302600-3302790)
[»] chr3 (1 HSPs)
chr3 (8-48)||(18269763-18269803)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 7767102 - 7766906
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| ||||||||||||||| ||||||||||||||||| | |||||||||||||| | |||||||| ||||||||||| ||| |||||| |||||    
T  7767102 agcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcaccaccattgtggccgatcaatcac 7767003  T
Q  108 tacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaag 205  Q
     |||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  7767002 cacctatgttgcgagcaaacataacctccat-cacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaccaccggcaag 7766906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 18696958 - 18697155
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| ||||||||||||||| ||||| |||| |||||| |||||||||| ||||| | |||||||| ||||||||||||||||| ||||||||||    
T  18696958 agcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgactgatccatcac 18697057  T
Q  108 tacctattttgcgagaaaacataaccttcatc-cacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaa 204  Q
     |||||| ||||| | ||||||||||| || | ||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18697058 cacctatgttgcgggcaaacataacctccaccacacaaccaatataaaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaccaccgacaa 18697155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 27170186 - 27169997
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| ||||||||||||||| ||||||||||||||||| ||||| ||||| || ||| |||||||| || |||||||||||||||||||||||||    
T  27170186 agcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatatgatccattaccaccatcgtgaccgatccatcac 27170087  T
Q  108 tacctattttgcgagaaaacataaccttcatccacaaccaagagag-aaaacaaatcaaatagtccgagacccacgaaaaccaaacaacca 197  Q
     || ||  ||||||| ||||||||||| || ||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||||||    
T  27170086 cacttacgttgcgagcaaacataacctcca-ccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaacca 27169997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 41355553 - 41355447
Alignment:
Q  98 gatccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaacca 197  Q
    ||||||||||  ||||| ||||||| ||| ||||||| || ||||||||||||||||||||||||||||||| |  ||| ||||| |||| |||||||||    
T  41355553 gatccatcaccgcctatgttgcgagcaaatataacctcca-ccacaaccaagagagaaaacaaatcaaatagcctaagatccacggaaactaaacaacca 41355455  T
Q  198 ccgacaag 205  Q
    ||| ||||    
T  41355454 ccggcaag 41355447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 7271893 - 7271992
Alignment:
Q  102 catcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccga 201  Q
    |||||| |||||| ||||||| ||||||||||| || |||||||||||||||||||| |||||||||||   || ||||  |||||||||||||||| ||    
T  7271893 catcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagagaaaacgaatcaaatagt---agccccaataaaaccaaacaaccactga 7271988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 26656827 - 26656927
Alignment:
Q  101 ccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccg 200  Q
    ||||||| || ||| ||||||| |||||||||||||| | |||||||||||||||||| |||||||||||   || ||||  |||| |||||||| ||||    
T  26656827 ccatcaccacttatattgcgagcaaacataaccttca-caacaaccaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaaccg 26656922  T
Q  201 acaag 205  Q
    |||||    
T  26656923 acaag 26656927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 26928414 - 26928514
Alignment:
Q  101 ccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccg 200  Q
    ||||||| || ||| ||||||| |||||||||||||| | |||||||||||||||||| |||||||||||   || ||||  |||| |||||||| ||||    
T  26928414 ccatcaccacttatattgcgagcaaacataaccttca-caacaaccaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaaccg 26928509  T
Q  201 acaag 205  Q
    |||||    
T  26928510 acaag 26928514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 41355615 - 41355543
Alignment:
Q  13 cacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcacc 85  Q
    |||| ||||||||||||||| ||||||||||||||||  ||||||| || ||||  | |||||||| ||||||    
T  41355615 cacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatccatcacc 41355543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 6030428 - 6030388
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccat 48  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  6030428 agcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 23054320 - 23054135
Alignment:
Q  18 accaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcactacctatttt 117  Q
    ||||||||||||||| |||||| |||||||||| |||||||||| ||||| | |||||||| | ||| ||||||||||| |||||||||| |||||| ||    
T  23054320 accaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatatgatccagcac-accatcgtgactgatccatcaccacctatgtt 23054222  T
Q  118 gcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaag 205  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  23054221 gcgagcaaacataacctcca-ccacaaccaagagagaaaacaaatcaaatagtctcagacccacgaaaaccaaacaaccactgacaag 23054135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 47518535 - 47518352
Alignment:
Q  21 aacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcactacctattttgcg 120  Q
    |||||||||||| ||||||||||||||||  |||||||||| ||||| | |||||||  ||||||||||| ||||| |||||||||| |||||| |||||    
T  47518535 aacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattcatcaccaccattgtgactgatccatcaccacctatgttgcg 47518436  T
Q  121 agaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaag 205  Q
    || ||||||||||| || |||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  47518435 agcaaacataacctcca-ccacaacatagagagaaaacaaatcaaatagtctgagacccatgaaaaccaaacaaccaccgacaag 47518352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 53202296 - 53202487
Alignment:
Q  13 cacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcactacct 112  Q
    |||| ||||| ||||||||| ||||||||||||||||  |||||||||| ||| | | |||||||  ||||||||||||||||||||||  |||| ||||    
T  53202296 cacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcaccaccatcgtgaccgatctgtcaccacct 53202395  T
Q  113 attttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaag 205  Q
    || ||||||| ||||||||||| || ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  53202396 atgttgcgagcaaacataacctcca-ccacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaaccacagacaag 53202487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 6410016 - 6410164
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| |||||||||||| || || ||||||||||||||||| ||||||| |||| || || ||||| ||| ||||| ||||||||||||||||||    
T  6410016 agcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgaccgatccatcac 6410115  T
Q  108 tacctattttgcgagaaaacataaccttcatccacaaccaagagagaaa 156  Q
     |||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  6410116 cacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 6410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 24957626 - 24957548
Alignment:
Q  85 caccatcgtgaccgatccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatc 163  Q
    |||| ||||||||||| |||||| |||||| ||||||| ||||||||||| || ||||  |||||| ||||||||||||    
T  24957626 caccttcgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacccacctccaagaaagaaaacaaatc 24957548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 34227110 - 34227057
Alignment:
Q  13 cacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaac 66  Q
    |||||||||||||||||||| |||||| |||||||||  |||||||||| ||||    
T  34227110 cacagaccaacacaaccaaagatccattgaaaccatataagttcataagcgaac 34227057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 17375302 - 17375496
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| ||||||||||||||| || |||||||||||||| |||||||||| ||||| | |||||||| |||||||||||||||| |||||||||||    
T  17375302 agcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgatcgatccatcac 17375401  T
Q  108 tacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgaca 203  Q
     |||||| ||| ||| ||||||||||| || |||||||||| ||||||||| |||||||||||  |||| ||||||||||||||||||||||||||    
T  17375402 cacctatgttgtgagcaaacataacctcca-ccacaaccaatagagaaaacgaatcaaatagtgtgagagccacgaaaaccaaacaaccaccgaca 17375496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 1895440 - 1895631
Alignment:
Q  13 cacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcactacct 112  Q
    |||| ||||||||||||||| ||||||||||||||||  |||||||||| ||||| | ||||||   |||||||||||| ||||||||| ||||| ||||    
T  1895440 cacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcaccaccatcatgaccgatcaatcaccacct 1895539  T
Q  113 attttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaag 205  Q
    || ||||||| | ||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  1895540 atgttgcgagcagacataacctcca-ccacaaccaagagagaaaagaaatcaaatagtctgagacccacaaaaaccaaacaaccaccgacaag 1895631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 17282031 - 17281850
Alignment:
Q  18 accaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcactacctatttt 117  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||  |||| | |||||||| ||||||||||| ||||| |||||||||| |||||| ||    
T  17282031 accaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagatatgatccatcaccaccattgtgactgatccatcaccacctatgtt 17281932  T
Q  118 gcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccg 200  Q
    ||||| ||||||||||| || |||| |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  17281931 gcgagcaaacataacctcca-ccactaccaagagagaaaacaaatcaaatagtctgagacctacgaaaaacaaacaaccaccg 17281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 1551690 - 1551510
Alignment:
Q  13 cacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcactacct 112  Q
    |||| ||||||||||||||| |||||||||||| |||  |||||||||| ||||| ||| |||||| ||||||||||||||||| |||||||||| ||||    
T  1551690 cacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacatgatccatcaccaccatcgtgactgatccatcaccacct 1551591  T
Q  113 attttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaa 194  Q
    || ||||||| ||||||||| | || |||||||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  1551590 atgttgcgagcaaacataacatcca-ccacaaccaatagagaaaacaaatcaaatagtctgagacccacgaaaatcaaacaa 1551510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 3921622 - 3921697
Alignment:
Q  13 cacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccacc 88  Q
    |||| ||||||||||||||| ||||||| ||||||||  |||||||||| ||||  | |||||||| |||||||||    
T  3921622 cacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatatgatccatcaccacc 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 38531225 - 38531146
Alignment:
Q  80 atcaccaccatcgtgaccgatccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaaca 159  Q
    ||||||||  |||| ||||||||||||| || ||| ||||||  ||||| ||||| ||||||| ||||||| ||||||||    
T  38531225 atcaccactttcgtaaccgatccatcaccacatatgttgcgaacaaacaaaacctccatccaccaccaagaaagaaaaca 38531146  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 4140576 - 4140618
Alignment:
Q  163 caaatagtccgagacccacgaaaaccaaacaaccaccgacaag 205  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||    
T  4140576 caaatagtctgagacccacgaaaaccaaagaaccaccggcaag 4140618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 34660311 - 34660351
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccat 48  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  34660311 agcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 20740613 - 20740788
Alignment:
Q  18 accaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcactacctatttt 117  Q
    ||||||||||||||| ||||||||||||||||  |||||||||  ||||| | |||||||| |||||||||||||||||| ||||||||| |||||| ||    
T  20740613 accaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatatgatccatcaccaccatcgtgaccaatccatcaccacctatgtt 20740712  T
Q  118 gcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaa 194  Q
    ||||| ||||||||| | || ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  20740713 gcgagcaaacataacatcca-ccacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaa 20740788  T

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Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 21881492 - 21881688
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| ||||||| ||||||| || |||||||||||||  |||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||    
T  21881492 agcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcac 21881591  T
Q  108 tacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaag 205  Q
     |||| | ||||||| |||||||||| ||  ||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||    
T  21881592 cacctttgttgcgagcaaacataacc-tccgccacagccaagagagaaaacgaatcaaatagtctgagagccacgaaaaccaaacaacgaccgacaag 21881688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 30845650 - 30845717
Alignment:
Q  92 gtgaccgatccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaaca 159  Q
    ||||||||||||||   |||||| ||||||||||||| |||||||||||||  |||||||||||||||    
T  30845650 gtgaccgatccatctgcacctatgttgcgagaaaacaaaaccttcatccaccgccaagagagaaaaca 30845717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 34118009 - 34118195
Alignment:
Q  20 caacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcactacctattttgc 119  Q
    ||||||||||||| |||||  |||||||||| |||||||||| ||||| | |||||||| |||||||||||||||||||||||||||| |||||| ||||    
T  34118009 caacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatgttgc 34118108  T
Q  120 gagaaaacataaccttcatc-cacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaag 205  Q
    ||| |||||||||||  | | ||||||||| ||||||||||||||||||| || |||| |||||||||| |||||||||||| ||||    
T  34118109 gagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagatccacgaaaactaaacaaccaccggcaag 34118195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 39709029 - 39708923
Alignment:
Q  97 cgatccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaacc 196  Q
    ||||||||||| |||||| ||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  39709029 cgatccatcaccacctatattgcgagcaaacataacctcca-ccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacc 39708932  T
Q  197 accgacaag 205  Q
    |||||||||    
T  39708931 accgacaag 39708923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 11408082 - 11407928
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| ||||||||||||||| ||   |||||||||||| |  |||||||  ||||||||| ||||| ||||||||| ||||| ||||||||||||    
T  11408082 agcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggccgatccatcac 11407983  T
Q  108 tacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaat 162  Q
     || ||| ||||||| ||||||||||| || |||| |||||||||||||||||||    
T  11407982 cacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaacaaat 11407928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 34655070 - 34655171
Alignment:
Q  98 gatccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaacca 197  Q
    |||||||||| |||||| ||||||| ||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||    
T  34655070 gatccatcaccacctatgttgcgagcaaacataacctcca-ccacaaccaaaagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaaca 34655168  T
Q  198 ccg 200  Q
    |||    
T  34655169 ccg 34655171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 39709095 - 39709015
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccacc 88  Q
    |||| |||| ||||||||||||||| ||||||| ||||||||| ||||| |||| ||||||| ||| |||| |||||||||    
T  39709095 agcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc 39709015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 26236749 - 26236671
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcacca 86  Q
    |||| |||| |||||| |||||||| |||||||||| |||||| || ||||||||||||||| || ||||| |||||||    
T  26236749 agcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctgatccatcacca 26236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 615823 - 615919
Alignment:
Q  101 ccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccg 200  Q
    ||||||| |||||| ||||||  |||||||| || || |||||||||||||||||||| |||||||||||   ||  |||  ||||||||||||||||||    
T  615823 ccatcaccacctatgttgcgatcaaacataatctcca-ccacaaccaagagagaaaacgaatcaaatagt---agctccaataaaaccaaacaaccaccg 615918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 26236682 - 26236622
Alignment:
Q  98 gatccatcactacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaac 158  Q
    |||||||||| | |||| || |||| ||||||||||| ||||||| ||| |||||||||||    
T  26236682 gatccatcaccatctatgtttcgagtaaacataacctccatccaccaccgagagagaaaac 26236622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 5994655 - 5994892
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| ||||||||||||||| ||||||| ||||||||| |||||||||| ||||||| |||||||| |||||||||||| ||| |||||||| |     
T  5994655 agcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatccatcaccaccatcatgatcgatccattag 5994754  T
Q  108 tacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaagta 207  Q
     | |||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||||| ||||| |||  |    
T  5994755 ca-ctatgttgcgagcaaacataacatccatccacaaccaagagagaaaacaaatcaaacagtttgaggcccacgaaaaccaaacaatcaccggcaacca 5994853  T
Q  208 tatatcaagtgacacaccacgaacaccaccagcgtcccaacca 250  Q
    |  | ||    |||||||||| ||||||||| |||||||||||    
T  5994854 tccaaca----acacaccacgtacaccaccaacgtcccaacca 5994892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 10408850 - 10409046
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| ||||||||||||||| || |||||||||||||| |  ||||||| ||||| | |||||||| ||||||||||||||||||| ||||||||    
T  10408850 agcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatgatccatcaccaccatcgtgaccgttccatcac 10408949  T
Q  108 tacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccaccgacaag 205  Q
     |||||| ||||||| ||||||||||| || |||||||||||||||| || ||||||||||||  ||||||||| ||||||||| ||||||| |||||    
T  10408950 cacctatgttgcgagcaaacataacctcca-ccacaaccaagagagagaaaaaatcaaatagtttgagacccacaaaaaccaaataaccaccaacaag 10409046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 6444065 - 6444214
Alignment:
Q  13 cacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcactacct 112  Q
    |||| |||||||||| |||| || | |||||||||||| || ||||| | |||| ||||| ||||| ||||||||| | |||||| |||||| || ||||    
T  6444065 cacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatctgatccatcaccacctttgtgaccaatccataaccacct 6444164  T
Q  113 attttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaat 162  Q
    |  ||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  6444165 aagttgcgagcaaacataacctccatccacaaccaagagagaaatcaaat 6444214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 3302600 - 3302790
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccataatagttcataagtgaacccatatatgatcaatcaccaccatcgtgaccgatccatcac 107  Q
    |||| |||| ||||| ||||||||| |||||||||||| |||| |||| ||||| ||| | | |||||||  |||||||||||||||| ||||| |||||    
T  3302600 agcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatatgatgtatcaccaccatcgtgatcgatctatcac 3302699  T
Q  108 tacctattttgcgagaaaacataaccttcatccacaaccaagagagaaaacaaatcaaatagtccgagacccacgaaaaccaaacaaccacc 199  Q
     |||||| ||||||| ||||||||||| || ||||||||||||||| |||  |||||||||||| |||| ||||||||||||||||||||||    
T  3302700 cacctatgttgcgagcaaacataacctcca-ccacaaccaagagaggaaatgaatcaaatagtctgagatccacgaaaaccaaacaaccacc 3302790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 18269803 - 18269763
Alignment:
Q  8 agcagcacagaccaacacaaccaaaaatccatcgaaaccat 48  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  18269803 agcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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