View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16532_low_4 (Length: 222)
Name: NF16532_low_4
Description: NF16532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16532_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 47580369 - 47580271
Alignment:
| Q |
110 |
cagaacctgtgcaaataaccatgcacttgcaatggaaaacagaactgcaaatcggtcaaatgtaggcttcttggtgcttatataacaatgaagatactg |
208 |
Q |
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| T |
47580369 |
cagaagctgtgcaaataaccatgcacttgcaatggtaaacagaactgcaaatcggtcaaatgtaggcttcttggtgcttatataacgatgaagatactg |
47580271 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 42324848 - 42324804
Alignment:
| Q |
57 |
gatgagagagaatataatgacatattgaaattgtaaaacacacag |
101 |
Q |
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| T |
42324848 |
gatgagagagaatataatgacatattgaaattgtatcacacacag |
42324804 |
T |
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