View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_10 (Length: 564)
Name: NF16533_high_10
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Complemental strand, 41067313 - 41066781
Alignment:
| Q |
16 |
gcaacaccaatggtgcatacacctaggnnnnnnntgacaaaacaattgactggaaaaagggatgatacacctttgcattctgcagcaagatcagggaatt |
115 |
Q |
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| T |
41067313 |
gcaacaccaatggtgcatacacctaggaaaaaaatgacaaaacaattgactggaaaaagggatgatacacctttgcattctgcagcaagatcagggaatt |
41067214 |
T |
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| Q |
116 |
tagatgttgtgagggatattcttaatgatgctcaagaggatgaattgcttgaattattggctaggcagaaccaagatggagaaacagctctttatgttgc |
215 |
Q |
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| T |
41067213 |
tagatgttgtgagggatattcttaatgatgctcaagaggatgaattgcttgaattattggctaggcagaaccaagatggagaaacagctctttatgttgc |
41067114 |
T |
|
| Q |
216 |
tgctgagtatggttatattgatgtcgttcggggaatgattcaatattatgatcttgcttgtgctggaattaaagcaagaaacggttttgatgcatttcat |
315 |
Q |
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| T |
41067113 |
tgctgagtatggttatattgatgtcgttcggggaatgattcaatattatgatcttgcttgtgctggaattaaagcaagaaacggttttgatgcatttcat |
41067014 |
T |
|
| Q |
316 |
attgctgctaaacaaggagatataggtattttcaacatctttgttgtttatttgtttgttccatgtgatttctaagagtacgtaggcattttagtccttg |
415 |
Q |
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| T |
41067013 |
attgctgctaaacaaggagatataggtattttcaacatctttgttgtttatttgtttgttccatgtgatttctaagagtacgtaggcattttagtccttg |
41066914 |
T |
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| Q |
416 |
aaattatggggattactcaatttagcctcaaatttatgaaatagcagcctagtcgcattaattgaacaatgtcggtcaatttaatcnnnnnnnccttcaa |
515 |
Q |
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| T |
41066913 |
aaattatgaggattagtcaatttagcctcaaatttatgaaatagcagcctagtcgcattaattgaacaatgtcggtcaatttaatctttttttccttcaa |
41066814 |
T |
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| Q |
516 |
atttaacaccttcgttttaaaggttatattctt |
548 |
Q |
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| T |
41066813 |
atttaacaccttcgttttaaaggttatattctt |
41066781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 180 - 345
Target Start/End: Complemental strand, 23034089 - 23033924
Alignment:
| Q |
180 |
gcagaaccaagatggagaaacagctctttatgttgctgctgagtatggttatattgatgtcgttcggggaatgattcaatattatgatcttgcttgtgct |
279 |
Q |
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|||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||| | ||| | | |||||||| ||||||||||||||| |||| |
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| T |
23034089 |
gcagaatcaaggtggagaaacagcactttatgttgctgctgagtatggttatgttgatatggttagagagatgattcagtattatgatcttgctgatgct |
23033990 |
T |
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| Q |
280 |
ggaattaaagcaagaaacggttttgatgcatttcatattgctgctaaacaaggagatataggtatt |
345 |
Q |
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| T |
23033989 |
ggaattaaagcaagaaatggttttgatgcacttcatattgctgctaaacaaggggatttaggtatt |
23033924 |
T |
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