View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16533_high_106 (Length: 240)

Name: NF16533_high_106
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16533_high_106
NF16533_high_106
[»] chr2 (3 HSPs)
chr2 (1-225)||(5079630-5079854)
chr2 (21-217)||(5102447-5102643)
chr2 (21-217)||(5120072-5120268)
[»] chr3 (1 HSPs)
chr3 (5-196)||(16886729-16886920)
[»] chr6 (1 HSPs)
chr6 (21-216)||(14411857-14412052)
[»] chr8 (16 HSPs)
chr8 (10-196)||(24875513-24875699)
chr8 (10-196)||(24913164-24913350)
chr8 (10-196)||(25340781-25340967)
chr8 (10-165)||(25714975-25715130)
chr8 (90-196)||(25475137-25475243)
chr8 (10-196)||(25685429-25685615)
chr8 (10-196)||(25800068-25800254)
chr8 (52-165)||(22901263-22901376)
chr8 (10-165)||(25322438-25322593)
chr8 (90-196)||(25452853-25452959)
chr8 (92-196)||(23257800-23257904)
chr8 (10-165)||(25569688-25569843)
chr8 (90-165)||(25604499-25604574)
chr8 (122-196)||(25490094-25490168)
chr8 (90-165)||(25695222-25695297)
chr8 (10-196)||(25646824-25647010)
[»] chr4 (1 HSPs)
chr4 (52-196)||(10323691-10323835)
[»] scaffold0070 (1 HSPs)
scaffold0070 (10-196)||(17151-17337)
[»] scaffold0830 (1 HSPs)
scaffold0830 (90-196)||(4601-4707)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5079630 - 5079854
Alignment:
Q  1 atgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5079630 atgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttca 5079729  T
Q  101 tctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatat 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5079730 tctgttggcttctttcctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatat 5079829  T
Q  201 ttcaacattaatcactatttagtaa 225  Q
    |||||||||||||||||||||||||    
T  5079830 ttcaacattaatcactatttagtaa 5079854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 5102643 - 5102447
Alignment:
Q  21 aatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgt 120  Q
    |||||||||||||||||   |||||    ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | ||    
T  5102643 aatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaattcttctgaaaacatttcatttgttggcatctttccggt 5102544  T
Q  121 gaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatatttcaacattaatcacta 217  Q
    ||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||| | |||  |||||||||||||| ||| | ||||||||||||||    
T  5102543 gaacatttccattagcattatcccatagctgtacacatctcctttaactgaaatgattccgctagatccatactctgtatatgaacattaatcacta 5102447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 5120268 - 5120072
Alignment:
Q  21 aatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgt 120  Q
    |||||||||||||||||   |||||    ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||    
T  5120268 aatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaattcttctgaaaacatttcatttgttggcttctttccggt 5120169  T
Q  121 gaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatatttcaacattaatcacta 217  Q
    ||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||| |  ||| |||||||||||||| ||| |  ||| |||||||||    
T  5120168 gaacatttccattagcattatcccatagctgtacacatctcctttaactgaaatgatccccctagatccatactctgtatatggacaataatcacta 5120072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 16886920 - 16886729
Alignment:
Q  5 tgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctg 104  Q
    ||||||||||| ||  |||||||||||||||||||||||||  | ||||| ||||||||||| ||||| ||||||||||||| | |||||||||||| ||    
T  16886920 tgtgagactaaattgtaatccacaacttccataactgaattaggcattgactcactaatccatgtttttaaggttaattcttgtacaaacatttcatttg 16886821  T
Q  105 ttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||||||||||| |||||||||||||||||||||||| |||| | || ||||||||||||||||  ||||| |||||||||||||||||||||    
T  16886820 ttggcttctttcctgtgaagatttccattagcattactccataactgtacacatctcctttaatagaaatgactcccttagatccatactct 16886729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 14411857 - 14412052
Alignment:
Q  21 aatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgt 120  Q
    |||||||||||||||||   ||||||   || ||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| | ||    
T  14411857 aatccacaacttccatactcgaattggccatcgattcgctaatccaagttttcaaagttaattcttctgaaaacatttcatttgttggcttctttccggt 14411956  T
Q  121 gaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactctatatttcaacattaatcact 216  Q
    ||| | ||||||||||||||| ||| |||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||| |  ||||||||||||    
T  14411957 gaacagttccattagcattatcccatagctgtacacatctcctttaacagaaatgactcctttagatccatactctgtatatacacattaatcact 14412052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 24875699 - 24875513
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | |||| |||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  24875699 gactaaatttgaatccatgacctccataattgaattaggcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 24875600  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
     | |||  ||||||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||||||||||    
T  24875599 ctttttcttgtgaagatttccattagcataatcccatagctgtacacatctcctttgacagaaacaattcctttagatccatactct 24875513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 24913350 - 24913164
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | |||| |||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  24913350 gactaaatttgaatccatgacctccataattgaattaggcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 24913251  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
     |  ||  ||||||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | |||||||||||||||||||    
T  24913250 attattcttgtgaagatttccattagcataatcccatagctgtacacatctcctttcacagaaacaattcccttagatccatactct 24913164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 25340781 - 25340967
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | |||| |||| ||||| || |||||| ||| |||  |  ||||||| ||||||||||||    
T  25340781 gactaaatttgaatccaagacctccataattgaattaggaaatgatccactgatccatgtcttcaagtttagttcagcaacaaacatatcatctgttggc 25340880  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  ||  ||||||||||||||||| ||| || ||| |||| |||||||||||||| || ||||  | |||||||||||||||||||    
T  25340881 tttcttcttgtgaagatttccattaacatgatcccatagctgtacacatctcctttgacagaaacaattcccttagatccatactct 25340967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 25714975 - 25715130
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | ||||||||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  25714975 gactaaatttgaatccatgacctccataattgaattaggcaatgattcactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 25715074  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    || |||  ||| ||||||||||||||||| || ||| |||| ||||| ||||||||    
T  25715075 ttttttcttgttaagatttccattagcataatcccatagctgtacacgtctccttt 25715130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 25475137 - 25475243
Alignment:
Q  90 caaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatcc 189  Q
    ||||||| |||||||||||||| |||  ||| ||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| ||||||||    
T  25475137 caaacatatcatctgttggcttttttcttgttaagatttccattagcataatcccatagctgtacacatctcctttcacagaaacaattcctttagatcc 25475236  T
Q  190 atactct 196  Q
    |||||||    
T  25475237 atactct 25475243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 25685429 - 25685615
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | |||| || | ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  25685429 gactaaatttgaatccaggacctccataattgaattaggcaatgatccaatgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 25685528  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  ||  |||||| |||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||||||||||    
T  25685529 tttcttcttgtgaaaatttccattagcataatcccatagctgtacacatctcctttgaccgaaacaattcctttagatccatactct 25685615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 25800068 - 25800254
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||| | ||||||  | | |||| |||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  25800068 gactaaatttgaatccatgacctccatgattgaattaggcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 25800167  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  ||  ||||||||||||||||| ||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||||||||||    
T  25800168 tttcttcttgtgaagatttccattaacatgatcccatagctgtacacatctcctttgacggaaacaattcctttagatccatactct 25800254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 22901376 - 22901263
Alignment:
Q  52 tgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagcta 151  Q
    ||||||||| ||||| || ||||| ||||  |||||| ||||||| ||||||||||||||  ||  ||| ||||||||||||||||| || ||| ||||     
T  22901376 tgattcactgatccatgtcttcaaagttaggtcttctacaaacatatcatctgttggctttcttcttgtaaagatttccattagcataatcccatagctg 22901277  T
Q  152 tacacatctccttt 165  Q
    || |||||||||||    
T  22901276 tatacatctccttt 22901263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 25322438 - 25322593
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || |||||||  |||||  | | ||||| ||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  25322438 gactaaatttgaatccatgacctccataatggaattaggcaatgattgactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 25322537  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    ||  ||  ||||||||||||||||| |||||| ||| |||| ||||| ||||||||    
T  25322538 tttcttcttgtgaagatttccattatcattatcccatagctgtacacgtctccttt 25322593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 25452853 - 25452959
Alignment:
Q  90 caaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatcc 189  Q
    ||||||| ||||||||||||||  ||  ||| ||||||||||||| ||| || ||| |||| |||||||||||||| || ||||  | ||| ||||||||    
T  25452853 caaacatatcatctgttggctttcttcttgtaaagatttccattaacatgatcccatagctgtacacatctcctttgacggaaacaattcctttagatcc 25452952  T
Q  190 atactct 196  Q
    |||||||    
T  25452953 atactct 25452959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 23257800 - 23257904
Alignment:
Q  92 aacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccat 191  Q
    ||||| ||||||||||||||  |   ||||||||||||||||||||| || ||| |||| || ||||||||||| || |||||   |||||| |||||||    
T  23257800 aacatatcatctgttggctttctccttgtgaagatttccattagcataatcccatagctgtatacatctcctttgacagaaatagttccctttgatccat 23257899  T
Q  192 actct 196  Q
    |||||    
T  23257900 actct 23257904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 25569688 - 25569843
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | ||||||||| ||||| || |||||  ||| |||| |  |||| || ||||||||||||    
T  25569688 gactaaatttgaatccaagacctccataattgaatttggcaatgattcactgatccatgtcttcaaacttagttctgcaacaaatatatcatctgttggc 25569787  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    ||  ||  ||||||||||||||||||||| || ||| |||| || | |||||||||    
T  25569788 tttcttcttgtgaagatttccattagcataatcccatagctgtaaatatctccttt 25569843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 25604499 - 25604574
Alignment:
Q  90 caaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    ||||||| |||||| |||||||  | | ||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  25604499 caaacatatcatctattggctttctctttgtaaagatttccattagcataattccatagctgtacacatctccttt 25604574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 25490094 - 25490168
Alignment:
Q  122 aagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||||||||||    
T  25490094 aagatttccattagcataatcccatagctgtacacatctcctttgacagaaacaattcctttagatccatactct 25490168  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 25695222 - 25695297
Alignment:
Q  90 caaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagctatacacatctccttt 165  Q
    ||||||| ||||||||||||||  ||  ||||||||||||||||||||| || ||| ||||  |||| ||||||||    
T  25695222 caaacatatcatctgttggctttcttcttgtgaagatttccattagcataatcccatagctgaacacgtctccttt 25695297  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 25646824 - 25647010
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  || ||||||| ||||||  | | ||||  ||| ||||| || |||||| ||| |||| |  ||||||| |||||| |||||    
T  25646824 gactaaatttgaatccatgacctccataattgaattaggcaatgatctactgatccatgtcttcaagcttagttctgcaacaaacatatcatctattggc 25646923  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  |   ||| ||||||||||||||||| || ||| || | |||||||||||||| || ||||  | ||| || ||||||||||||    
T  25646924 tttctccttgtaaagatttccattagcataatcccatagttgtacacatctcctttcacagaaacaattcctttcgatccatactct 25647010  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 10323691 - 10323835
Alignment:
Q  52 tgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgtgaagatttccattagcattattccaaagcta 151  Q
    |||| |||| ||||| || |||||| ||| |||| | |||||||| ||||||||||||||  ||  ||||||||||||||||||||| || ||| ||||     
T  10323691 tgatccactgatccatgtcttcaagcttagttctgcagcaaacatatcatctgttggctttcttcttgtgaagatttccattagcataatcccatagctg 10323790  T
Q  152 tacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||||| |||||||| || ||||  | ||| |||||||||||||||    
T  10323791 tacacgtctcctttgacagaaacaattcctttagatccatactct 10323835  T

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Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 17337 - 17151
Alignment:
Q  10 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 109  Q
    |||||| ||||||||||  |  ||||||| ||||||  | | |||| |||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  17337 gactaaatttgaatccaagagctccataattgaattaggcaatgatccactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 17238  T
Q  110 ttcttttctgtgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatccatactct 196  Q
    ||  ||  ||| ||||||||||||||||| || ||| |||| ||||| |||||||| || ||||  | |||||||||||||||||||    
T  17237 tttcttcttgtaaagatttccattagcataatcccatagctgtacacgtctcctttgacagaaacaattcccttagatccatactct 17151  T

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Target: scaffold0830 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 4707 - 4601
Alignment:
Q  90 caaacatttcatctgttggcttcttttctg-tgaagatttccattagcattattccaaagctatacacatctcctttaactgaaattactcccttagatc 188  Q
    ||||||| |||||||||||||| | ||||| ||||||||||||||||||| || ||| |||| |||||||||||||| || ||||  | ||| |||||||    
T  4707 caaacatatcatctgttggctt-tcttctggtgaagatttccattagcataatcccatagctgtacacatctcctttgacagaaacaattcctttagatc 4609  T
Q  189 catactct 196  Q
    ||||||||    
T  4608 catactct 4601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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