View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16533_high_113 (Length: 231)
Name: NF16533_high_113
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_113 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 33826916 - 33826715
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33826916 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
33826817 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33826816 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcgtttttctttatcttatgatcaataatagtcttttttcttaaatatcttagtaagtat |
33826717 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
33826716 |
tt |
33826715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 2416815 - 2416614
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2416815 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgttaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
2416716 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2416715 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcgtttttctttatcttatgatcaataatagtcttttttcttaaatatcttagtaagtat |
2416616 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
2416615 |
tt |
2416614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 39878552 - 39878753
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39878552 |
atgaattgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagagtaagaaacag |
39878651 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
39878652 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaataatagtcttttttcttaaatatcttagtatgtat |
39878751 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
39878752 |
tt |
39878753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 39348310 - 39348511
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
39348310 |
atgagctgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtaatttatacattgagaataagaaacag |
39348409 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
39348410 |
aaaaattgtacttgatataaataaatttagtgaggctcgatcgtttttctttatcttctgatcaataatagtcttttctcttaaatatcttagtaagtat |
39348509 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
39348510 |
tt |
39348511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 16652401 - 16652602
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16652401 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
16652500 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16652501 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcgtttttctttatcttatgatcaataatagtcttttttcttaaatatcttagtaagtat |
16652600 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
16652601 |
tt |
16652602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 7605233 - 7605032
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7605233 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgttaaatttgagagtttgtatggctaaaatatgtagtgtataccttgagaataagaaacag |
7605134 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
7605133 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcgtttttctttaactaatgatcaataatagtcttttttcttaaatatcttagtaaatat |
7605034 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
7605033 |
tt |
7605032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 9061490 - 9061691
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9061490 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgttaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
9061589 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9061590 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcgtttttctttatcttatgatcaataatagtcttttttcttaaatatcttagtaagtat |
9061689 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
9061690 |
tt |
9061691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 24773936 - 24773735
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24773936 |
atgaactgatagaagtagtcacggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
24773837 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24773836 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcgtttttctttatcttatgatcaataatagtcttttttcttaaatatcttagtaagtat |
24773737 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
24773736 |
tt |
24773735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 35349742 - 35349943
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
35349742 |
atgagctgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtaatttatacattgagaataagaaacag |
35349841 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
35349842 |
aaaaattgtacttgatataaataaatttagtgaggctcgatcgtttttctttatcttctgatcaataatagtcttttctcttaaatatcttagtaagtat |
35349941 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
35349942 |
tt |
35349943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 27314155 - 27313954
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27314155 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgttaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
27314056 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27314055 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcgtttttctttatcttatgatcaataatagtcttttttcttaaatatcttagtaagtat |
27313956 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
27313955 |
tt |
27313954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 10788922 - 10788791
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
10788922 |
atgaattgatagaagtaatgaaggattgtgtgtagtgctgctaaatttaagagtttgtatggctaaaatatgtaatttataccttgagaataaaaaatag |
10788823 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtg |
143 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| |
|
|
| T |
10788822 |
aataattgtacttaatataaataaatttagtg |
10788791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 2276819 - 2277020
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
2276819 |
atgagctgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtaatttatacattgagaataagaaacag |
2276918 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
2276919 |
aaaaattgtacttgatataaataaatttagtgaggctcgatcgtttttctttatcttctgatcaataatagtcttttctcttaaatatcttagtaagtat |
2277018 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
2277019 |
tt |
2277020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 920727 - 920917
Alignment:
| Q |
25 |
agtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacagaaaaattgtactt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
920727 |
agtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacagaaaaattgtactt |
920826 |
T |
|
| Q |
125 |
gatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtc--ttttttcttaaatatcttagtaagtattt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
920827 |
gatataaataaatttagtgaggctcaatcgtttttctttatcttatgatcaataatagtctttttttttttaaatatcttagtaagtattt |
920917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 4014153 - 4014354
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
4014153 |
atgagctgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtaatttatacattgagaataagaaacag |
4014252 |
T |
|
| Q |
112 |
aaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
4014253 |
aaaaattgtacttgatataaataaatttagtgaggctcgatcgtttttctttatcttctgatcaataatagtcttttctcttaaatatcttagtaagtat |
4014352 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
4014353 |
tt |
4014354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 15198106 - 15197902
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagt---gctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaa |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15198106 |
atgaactgatagaagtagtcaaagattgtgtgtagtactgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaa |
15198007 |
T |
|
| Q |
109 |
cagaaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaag |
208 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
15198006 |
ctgaaaaattatacttgatataaataaatttagtgaggctcgatcgtttttctttatcttatgatcaataatagtcttttttcttaaatatcttagtatg |
15197907 |
T |
|
| Q |
209 |
tattt |
213 |
Q |
| |
|
||||| |
|
|
| T |
15197906 |
tattt |
15197902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 25880544 - 25880747
Alignment:
| Q |
12 |
atgaactgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatggctaaaatatgtagtttataccttgagaataagaaacag |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25880544 |
atgaattgatagaagtagtcaaggattgtgtgtagtgctgctaaatttgagagtttgtatgactaaaatatgtaatttataccttgagaataagaaacaa |
25880643 |
T |
|
| Q |
112 |
aaaaattgtacttgatataa--ataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatcttagtaagt |
209 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| | ||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
25880644 |
aataattgtacttgatataaatataaatttagtgaggcttaatcgtttttctttatcttctcatcaataatagtcttttttcttaaatatcttagtcagt |
25880743 |
T |
|
| Q |
210 |
attt |
213 |
Q |
| |
|
|||| |
|
|
| T |
25880744 |
attt |
25880747 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 38443473 - 38443585
Alignment:
| Q |
102 |
taagaaaca-gaaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagtagtcttttttcttaaatatc |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||||||||| |
|
|
| T |
38443473 |
taagaaacaagaaaaattgtacttgatataaataaatttagtgaggctcaatcgtttttctttaactgatgatcaataatagtcttttttcttaaatatc |
38443572 |
T |
|
| Q |
201 |
ttagtaagtattt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38443573 |
ttagtaagtattt |
38443585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 11371 - 11240
Alignment:
| Q |
82 |
tgtagtttataccttgagaataagaaacagaaaaattgtacttgatataaataaatttagtgaggctcaatcatttttctttatcttatgatcaatagta |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || |
|
|
| T |
11371 |
tgtagtttataccttgagaataagaaacagaaaaattgtacttgatataaataaatttagtgaggctcaatcgtttttctttatcttctgatcaataata |
11272 |
T |
|
| Q |
182 |
gtcttttttcttaaatatcttagtaagtattt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11271 |
gtcttttttcttaaatatcttagtaagtattt |
11240 |
T |
|
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