View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_115 (Length: 229)
Name: NF16533_high_115
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_115 |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 7211314 - 7211395
Alignment:
| Q |
133 |
attcaatatggaatgaatggtcctttttgcttcacttggacaggaagagcagtggattttcaagaggtgcatctgtgtatag |
214 |
Q |
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| T |
7211314 |
attcaatatggaatgaatggtcctttttgcttcacttggacaggaagagcagtggattttcaagaggtgcgtctgtgtatag |
7211395 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 7211196 - 7211250
Alignment:
| Q |
15 |
atgaagcacatgactcggcaagaatttgtcgccaatttaagaaggtaccattaaa |
69 |
Q |
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| T |
7211196 |
atgaagcacatgactcggcaagaatttgtcgccaatttaagaaggtaccattaaa |
7211250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 3270663 - 3270630
Alignment:
| Q |
172 |
acaggaagagcagtggattttcaagaggtgcatc |
205 |
Q |
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| T |
3270663 |
acagaaagagcagtggattttcaagaggtgcatc |
3270630 |
T |
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