View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_118 (Length: 224)
Name: NF16533_high_118
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_118 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2308360 - 2308137
Alignment:
| Q |
1 |
tacttcctcgttagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2308360 |
tacttcctcgttagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttacca |
2308261 |
T |
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| Q |
101 |
caatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcaagccaaatgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2308260 |
caatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcatgccaaatgat |
2308161 |
T |
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| Q |
201 |
ccacaaacctttacgaatcctctt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2308160 |
ccacaaacctttacgaatcctctt |
2308137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 32915190 - 32915401
Alignment:
| Q |
1 |
tacttcctcgttagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttacca |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||| ||| | ||| ||||| || ||| |||||||||||| ||||||||| |||| |
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| T |
32915190 |
tacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactccaccgccatgaattaacca |
32915289 |
T |
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| Q |
101 |
caatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcaagccaaatgat |
200 |
Q |
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|||| |||||||||| ||| ||||||||| | ||||||||| | |||||| |||| ||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
32915290 |
caatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgat |
32915389 |
T |
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| Q |
201 |
ccacaaaccttt |
212 |
Q |
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|||||||||||| |
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| T |
32915390 |
ccacaaaccttt |
32915401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 24945440 - 24945349
Alignment:
| Q |
133 |
acctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcaagccaaatgatccacaaacctttacgaatcctctt |
224 |
Q |
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| T |
24945440 |
acctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaaccccttacggatcctctt |
24945349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 9359292 - 9359504
Alignment:
| Q |
12 |
tagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttaccacaatctccgcc |
111 |
Q |
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|||||||||||| ||||||||||||||||||||||||| || |||||||||| ||| ||| |||||||||||| ||| ||||| || |||||||||| | |
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| T |
9359292 |
tagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctatacaaactccaccgccacgaattaacaacaatctccgac |
9359391 |
T |
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| Q |
112 |
aaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcaagccaaatgatccacaaacctt |
211 |
Q |
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|||| ||| |||||||| | |||||||| |||| ||| ||| ||||| ||||||||||||||||| ||||||||| ||||||| |||||||| || | |
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| T |
9359392 |
aaaagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaacccct |
9359491 |
T |
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| Q |
212 |
tacgaatcctctt |
224 |
Q |
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| |||||| |||| |
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| T |
9359492 |
tgcgaatcttctt |
9359504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 520028 - 520098
Alignment:
| Q |
15 |
acattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacc |
85 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |||| ||||| ||||| |
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| T |
520028 |
acattcttgaggattccaattccattcatagtatagacaagtttgcataacaagcctagtcaaacaccacc |
520098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 43805598 - 43805532
Alignment:
| Q |
19 |
tcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacc |
85 |
Q |
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||||||||||||||| | ||||||||||||| ||| |||||||||||||| ||| |||||||||||| |
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| T |
43805598 |
tcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccacc |
43805532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 41195215 - 41195279
Alignment:
| Q |
160 |
ctcgcttgccaaatagcccatatagttgcaagccaaatgatccacaaacctttacgaatcctctt |
224 |
Q |
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||||||||||||||| |||| ||||| ||| ||||||| |||||||| || |||||||| ||||| |
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| T |
41195215 |
ctcgcttgccaaataacccaaatagtagcatgccaaataatccacaatcccttacgaattctctt |
41195279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 26209540 - 26209499
Alignment:
| Q |
6 |
cctcgttagacattcttgaggattccaattccattcataata |
47 |
Q |
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|||||| ||||||||||| ||||||||| ||||||||||||| |
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| T |
26209540 |
cctcgtaagacattcttgtggattccaactccattcataata |
26209499 |
T |
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