View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16533_high_15 (Length: 545)
Name: NF16533_high_15
Description: NF16533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16533_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 7 - 531
Target Start/End: Complemental strand, 41085917 - 41085393
Alignment:
| Q |
7 |
tccaagaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggttcagaatt |
106 |
Q |
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| T |
41085917 |
tccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggttcagaatt |
41085818 |
T |
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| Q |
107 |
atggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgttctatggcc |
206 |
Q |
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| T |
41085817 |
atggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgttctatggcc |
41085718 |
T |
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| Q |
207 |
tgattctaatgctatgaatatgatgatgtcatcttcttccaataattatacatggcaacaaccaccaccaatgatgcaaatggagttaccaggagagttg |
306 |
Q |
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| T |
41085717 |
tgattctaatgctatgaatatgatgatgtcatcttcttccaataattatacatggcaacaaccaccaccaatgatgcaaatggagttaccaggagagttg |
41085618 |
T |
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| Q |
307 |
gaactggaatactcaatgccattgccattgcccttgaataatgagaatggtactattaattccaattctactactagtgtcaatttaataagtgaaagtt |
406 |
Q |
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| T |
41085617 |
gaattggaatactcaatgccattgccattgcccttgaataatgagaatggtactattaattccaattctactactagtgtcaatttaataagtgaaagtt |
41085518 |
T |
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| Q |
407 |
ggaattcttgggattcttttgatctttcaactatggaagtcttctcttcaagttcaagaccttaatcaattgttaattagatctgattttccagatatat |
506 |
Q |
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| T |
41085517 |
ggaattcttgggattcttttgatctttcaactatggaagtcttctcttcaagttcaagaccttaatcaattgttaattagatctgattttccagatatat |
41085418 |
T |
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| Q |
507 |
aggtcaaatatttttcgtttatatt |
531 |
Q |
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| T |
41085417 |
aggtcaaatatttttcgtttatatt |
41085393 |
T |
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